View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9725_low_3 (Length: 239)
Name: NF9725_low_3
Description: NF9725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9725_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 16222702 - 16222489
Alignment:
| Q |
10 |
cttttttgttttgaccaaatctaaaacnnnnnnnggtattatttgtatgtcggtgggataaatataagagagaaattagatacatataagatgcaagaaa |
109 |
Q |
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| T |
16222702 |
cttttttgttttgaccaaatctaaaactttttttggtattatttgtatgtcggtgggataaatataagagagaaattagatacatataagatgcaagaaa |
16222603 |
T |
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| Q |
110 |
agacttgtggacataaaagcataaatacaaactagtcttgcataacaacagaagttataaagacgtttaaatccatattcatacgtgttagaaaatagtc |
209 |
Q |
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| T |
16222602 |
agacttgtggacataaaagcataaatacaaactagtcttgcataacaacagaagttataaagacgtttaaatccatattcatacgtgttagaaaatagtc |
16222503 |
T |
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| Q |
210 |
tactctgcgataat |
223 |
Q |
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| T |
16222502 |
tactctgcgataat |
16222489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 16219860 - 16219702
Alignment:
| Q |
51 |
tttgtatgtcggtgggataaatataagagagaaattagatacatataagatgcaagaaaagacttgtggacataaaagcataaatacaaactagtcttgc |
150 |
Q |
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| T |
16219860 |
tttgtatgtcggtgggataaatataaaagagaaattatacatgtataaggtgcaagaaaagacttgtggacatcaaagcataaatacaaacaagttttac |
16219761 |
T |
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| Q |
151 |
ataacaacagaagttataaagacgtttaaatccatattcatacgtgttagaaaatagtc |
209 |
Q |
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| T |
16219760 |
ataacaacagaagttataaagacggttaaattcacattcatacgtgttagaaaatagtc |
16219702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 16211052 - 16210971
Alignment:
| Q |
44 |
ggtattatttgtatgtcggtgggataaatataagagagaaattagatacatataagatgcaagaaaagacttgtggacataa |
125 |
Q |
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| T |
16211052 |
ggtattatttgtatgtgggtgggataaatataaaagagaaattagatacatataaggtgcaagaatagacttgtggacataa |
16210971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 16215280 - 16215199
Alignment:
| Q |
44 |
ggtattatttgtatgtcggtgggataaatataagagagaaattagatacatataagatgcaagaaaagacttgtggacataa |
125 |
Q |
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| T |
16215280 |
ggtattatttgtatgtcggtgggataaatataaaagggaaattagatacacataaggtgcaagaatagacttgtggacataa |
16215199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 16210960 - 16210861
Alignment:
| Q |
107 |
aaaagacttgtggacataaaagcataaatacaaactagtcttgcataacaacagaagttataaagacgtttaaatccatattcatacgtgttagaaaata |
206 |
Q |
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| T |
16210960 |
aaaaaacttgtggaca-aaaagcataaatacaaacaagtcttacataacaagagaagttat--cgacggttaaatccatactcatatgcgttagaaaaaa |
16210864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 16215181 - 16215140
Alignment:
| Q |
107 |
aaaagacttgtggacataaaagcataaatacaaactagtctt |
148 |
Q |
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| T |
16215181 |
aaaaaacttgtggacataaaagcataaatacaaacaagtctt |
16215140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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