View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9725_low_5 (Length: 214)
Name: NF9725_low_5
Description: NF9725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9725_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 44648507 - 44648324
Alignment:
| Q |
13 |
gcagagaattcacacattggagtgtggcagaaaggtgcaggtcctcgttcggaatcaaattggattatgatggttgagttagaaaggnnnnnnngtgctt |
112 |
Q |
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| T |
44648507 |
gcagagaattcacacattggagtgtggcagaaaggtgcaggtcctcgttcggaatcaaattggattatgatggttgagttagaaaggaaaaaaagtgctt |
44648408 |
T |
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| Q |
113 |
ctgtgccagagaaggcaaagccagaggaattaagtaaaaatggtttggatgatgaacagaaaattgctttgcagatgatagaag |
196 |
Q |
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| T |
44648407 |
ctgtgccagagaaggcaaagccagaggaattaagtaaaaatggtttggatgatgaacagaaaattgctttgcagatgatagaag |
44648324 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 2428470 - 2428397
Alignment:
| Q |
16 |
gagaattcacacattggagtgtggcagaaaggtgcaggtcctcgttcggaatcaaattggattatgatggttga |
89 |
Q |
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| T |
2428470 |
gagaattcacactttggagtgtggcagaaaagagcaggacctcgttcggactcgagctggatcatgatggttga |
2428397 |
T |
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