View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9726_low_1 (Length: 805)
Name: NF9726_low_1
Description: NF9726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9726_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 221 - 787
Target Start/End: Original strand, 36998286 - 36998852
Alignment:
| Q |
221 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
320 |
Q |
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| T |
36998286 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
36998385 |
T |
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| Q |
321 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
420 |
Q |
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| T |
36998386 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
36998485 |
T |
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| Q |
421 |
agaggaaaacaaacatacgaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggta |
520 |
Q |
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| T |
36998486 |
agaggaaaacaaacatacaaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggtg |
36998585 |
T |
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| Q |
521 |
taccctgtggcatttggatttccaccaacacgggtattatgggccgtggcggtcccatctgtgcctctattagtcccaatagggtgtgagcccaccacac |
620 |
Q |
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| T |
36998586 |
taccctgtggcatttggatttccaccaacacgggtattatgggccgtggcggtcccatctgtgcctctattagtcccaatagggtgtgagcccaccacac |
36998685 |
T |
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| Q |
621 |
cgtcgacgacatggcccgtgggctgtccagttccatgaccaggcatggctgacatctgatgtgccccagtgggatgtccataattcccagtggtagagta |
720 |
Q |
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| T |
36998686 |
cgtcgacgacatggcccgtgggctgtccagttccatgaccaggcatggctgacatctgatgtgccccagtgggatgtccataattcccagtggtagagta |
36998785 |
T |
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| Q |
721 |
tgtggcggtccccgttccagtcgtccctgtggtgtggtggggctgacccatatgcccagccgcagca |
787 |
Q |
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| T |
36998786 |
tgtggcggtccccgttccagtcgtccctgtggtgtggtggggctgacccatatgcccagccgcagca |
36998852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 36998050 - 36998251
Alignment:
| Q |
12 |
agaacctgtgagcattataaggttgtaaaatctaacattaatatatggctgttttcaggtaaggctttgaaggacttaatgtgaaaagctgctaaggcaa |
111 |
Q |
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| T |
36998050 |
agaaactgtgagcataataaggttgtaaaatctaaca---atatatggctgttttcaggtaaggctttgaaggatttaatgtggaaagctgctaaggcaa |
36998146 |
T |
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| Q |
112 |
acctcatcagttttgaatgtttctttggaagaaggctatgtcgaaaccattagttctatttaattccttnnnnnnnncattgttctatttaattaaaaat |
211 |
Q |
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| T |
36998147 |
acctcatcagtttttaacgtttctttggaagaaggctatgtcgaaaccattagttctatttaattcctt-aaaaaaacattgttctatttaattaaaaat |
36998245 |
T |
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| Q |
212 |
agaaaa |
217 |
Q |
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| |||| |
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| T |
36998246 |
acaaaa |
36998251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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