View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9726_low_2 (Length: 563)
Name: NF9726_low_2
Description: NF9726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9726_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 38064785 - 38064635
Alignment:
| Q |
125 |
ttagtctcatcaattagcatcatttaattttatatcttttaannnnnnn-cattatatgtgagaatacctaaatattttttgatttggggttgcaa-cat |
222 |
Q |
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| T |
38064785 |
ttagtctcatcaattaacatcatttaattttatatcttttaattttttttcattatatgtgagaatacctaaatattttttgatttggggttgcaaacat |
38064686 |
T |
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| Q |
223 |
aaaagacttgttcttatgcaacacaccaaatgacaaacatgcaactctcta |
273 |
Q |
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| T |
38064685 |
aaaagacttgctcttatgcaacacaccaaattacaaacatgcaactctcta |
38064635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 466 - 563
Target Start/End: Complemental strand, 38062793 - 38062696
Alignment:
| Q |
466 |
acccaaatcaaatcctaatcacaaatgatttggttacaactaagtttcnnnnnnnttattttccaatttgaaggaaagtggataacgaactcataccc |
563 |
Q |
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| T |
38062793 |
acccaaattaaaacctaatcacaaatgatttggttacaactaagtttcaaaaaaattattttccaatttgaagtaaagttgataacgaactcataccc |
38062696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 322 - 473
Target Start/End: Complemental strand, 38064332 - 38064191
Alignment:
| Q |
322 |
tatacgacgtgaaaatcagtgagactcatttatcatcattcatcactgccacaatcacatgtcaacattattagctctcnnnnnnnnnnnnnnnnnnncc |
421 |
Q |
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| T |
38064332 |
tatacgacatgaaaatcagtgagactcattt----------atcactgccacaatcacatgtcaacattattagctctcaaaagcaaaaaacaaaaaacc |
38064243 |
T |
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| Q |
422 |
acagcgtgaaagtgtgcactccactgaatagtatgttgtcacctacccaaat |
473 |
Q |
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| T |
38064242 |
acagcgtgaaagtgtgcactccactgaatagtatgttgtcacctacccaaat |
38064191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 38064892 - 38064848
Alignment:
| Q |
18 |
acgtgcatattacaatttacattagtaagtcttgtatgattataa |
62 |
Q |
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| T |
38064892 |
acgtgcattttacaatttacattagtaagtcttttatgattataa |
38064848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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