View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9726_low_5 (Length: 329)
Name: NF9726_low_5
Description: NF9726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9726_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 19337852 - 19337535
Alignment:
| Q |
11 |
caaaggcaataaaagcggggctttgctcaggccataaaactttgatctaaaactgtacttaatcatagttttaattatttattatacatttacacttgag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19337852 |
caaaggcaataaaagcggggctttgctcaggccataaaactttgatctaaaactgtacttaatcatagttttaattatttattatacatttacacttgag |
19337753 |
T |
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| Q |
111 |
agtttaggcttcaaaatgtttttccacgttgttattgttgagtttgactcaaaatttgatgtttgtgttctgtattgttccactcaaattattacgagat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19337752 |
agtttaggcttcaaaatgtttttccacgttgttattgttgagtttgactcaaaatttgatgtttgtgttctgtattgttccactcaaattattacgagat |
19337653 |
T |
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| Q |
211 |
atatatgttcaaagtttgaacttgactaagataaaataattcaagtggaattgttgtacaaacaatttattagcagaaaaatcagtattgaatgccttaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19337652 |
atatatgttcaaagtttgaacttgactaagataaaacaattcaagtggaattgttgtacaaacaagttattagcagaaaaatcagtattgaatgccttaa |
19337553 |
T |
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| Q |
311 |
ctaatattgtgataccta |
328 |
Q |
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|||||||||||||||||| |
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| T |
19337552 |
ctaatattgtgataccta |
19337535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 77 - 312
Target Start/End: Complemental strand, 19428248 - 19428007
Alignment:
| Q |
77 |
agttttaattatttattatacatttacacttgagagtttaggcttcaaaatgtttttccacgttgttattgttgagtttgactcaaaatttgatgtttgt |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19428248 |
agttttaattatttattatacatttacacttgagagtttaggcttcaaaatgtttttccacattgttattgttgagtttgactcaaaatttgatgtttgt |
19428149 |
T |
|
| Q |
177 |
gttctgta---------------ttgttccactcaaattattacgagatatatatgttcaaagtttgaacttgactaagataaaataattcaagtggaat |
261 |
Q |
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| T |
19428148 |
gttctgtattgtcctgtactgtattgttccactcaaattattatgag----atatgttcaaagtttgaacttgaataatataaaataattcaagtggaa- |
19428054 |
T |
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| Q |
262 |
tgttgtacaaacaatttattagcagaaaaatcagtattgaatgccttaact |
312 |
Q |
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|| ||||||||| ||||| ||||||| | ||||||||||||||||||| |
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| T |
19428053 |
--ttctacaaacaagttatt--cagaaaatttagtattgaatgccttaact |
19428007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 19395356 - 19395320
Alignment:
| Q |
226 |
ttgaacttgactaagataaaataattcaagtggaatt |
262 |
Q |
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| T |
19395356 |
ttgaacttgaataagataaaataattcaagtggaatt |
19395320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 19383038 - 19383005
Alignment:
| Q |
227 |
tgaacttgactaagataaaataattcaagtggaa |
260 |
Q |
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| T |
19383038 |
tgaacttgaataagataaaataattcaagtggaa |
19383005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 39126965 - 39126998
Alignment:
| Q |
146 |
tgttgagtttgactcaaaatttgatgtttgtgtt |
179 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
39126965 |
tgttgagtttgactcaaaatttgatgttcgtgtt |
39126998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 25723938 - 25723903
Alignment:
| Q |
144 |
attgttgagtttgactcaaaatttgatgtttgtgtt |
179 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
25723938 |
attgttgagattgactcaaaatttgatgtttgtgtt |
25723903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 35371086 - 35371051
Alignment:
| Q |
144 |
attgttgagtttgactcaaaatttgatgtttgtgtt |
179 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
35371086 |
attgttgagttagactcaaaatttgatgtttgtgtt |
35371051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 22066561 - 22066597
Alignment:
| Q |
144 |
attgttgagttt-gactcaaaatttgatgtttgtgtt |
179 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
22066561 |
attgttgagttttgactcaaaatttgatgtttgtgtt |
22066597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 917320 - 917356
Alignment:
| Q |
143 |
tattgttgagtttgactcaaaatttgatgtttgtgtt |
179 |
Q |
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||||||||||||||||| |||||||||||||| |||| |
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| T |
917320 |
tattgttgagtttgacttaaaatttgatgtttatgtt |
917356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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