View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9727_high_1 (Length: 369)
Name: NF9727_high_1
Description: NF9727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9727_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 12407684 - 12407905
Alignment:
| Q |
11 |
atggacatcaacagacgaaaatacccctaaaggtcttagccaaacgtgaaatgacacaattacccttaaatcatcttcattcactcaagaacattcacta |
110 |
Q |
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| T |
12407684 |
atggacatgaacagacaaaaataccc-taaaggtcttagccaaacatgaaaagatgcatttacccttaaatcttcttcattcactcaagaacattcacta |
12407782 |
T |
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| Q |
111 |
ccc---aaggatatcacgtgaatgctttttcctccaatccaattgttcatttccccttctattgtttgatttgcaactcttcttctcccatgaacatatt |
207 |
Q |
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| T |
12407783 |
ccccagaagaatatcacgtgaatgcttcttcctccaatccaattattcatttccccttctgttgtttgatttgcaactcttcttctcccataaagatatt |
12407882 |
T |
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| Q |
208 |
caacatccatgaattaataacct |
230 |
Q |
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| T |
12407883 |
caacatccatgaattaataacct |
12407905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 27999094 - 27999032
Alignment:
| Q |
20 |
aacagacgaaaatacccctaaaggtcttagccaaacgtgaaatgacacaattacccttaaatc |
82 |
Q |
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| T |
27999094 |
aacagacaaaaatacccctaagggtcttagccaaacgtgaaatgacacgtttacccttaaatc |
27999032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 40435519 - 40435576
Alignment:
| Q |
20 |
aacagacgaaaatacccctaaaggtcttagccaaacgtgaaatgacacaattaccctt |
77 |
Q |
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| T |
40435519 |
aacagacgaaaatacccctaaagatcttagccaaacgcaaaatgacacatttaccctt |
40435576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 24447210 - 24447249
Alignment:
| Q |
306 |
atcaaccaataaaaatcaaaactttgttcacaatttcaac |
345 |
Q |
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| T |
24447210 |
atcaaccaataaaaatcaaaactttgttcacaatttcaac |
24447249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 40439433 - 40439374
Alignment:
| Q |
20 |
aacagacgaaaatacccctaaaggtcttagccaaacgtgaaatgacacaattacccttaa |
79 |
Q |
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||||||||||||||||||| | ||||||||||||| | |||||| ||| |||||||||| |
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| T |
40439433 |
aacagacgaaaatacccctgagggtcttagccaaatgcaaaatgaaacatttacccttaa |
40439374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 34850300 - 34850250
Alignment:
| Q |
28 |
aaaatacccctaaaggtcttagccaaacgtgaaatgacacaattaccctta |
78 |
Q |
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||||||||||| | ||||||||||||||| |||||||||| ||||||||| |
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| T |
34850300 |
aaaatacccctgagggtcttagccaaacgcaaaatgacacatttaccctta |
34850250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 21783749 - 21783693
Alignment:
| Q |
20 |
aacagacgaaaatacccctaaaggtcttagccaaacgtgaaatgacacaattaccct |
76 |
Q |
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||||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||| |
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| T |
21783749 |
aacagacgaaaatacccctgaagatcttagccaaacgcaaaatgacacatttaccct |
21783693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 21370453 - 21370390
Alignment:
| Q |
12 |
tggacatcaacagacgaaaatacccctaaaggtcttagccaaacgtgaaatgacacaattaccct |
76 |
Q |
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||||||| ||||||||||||||||| | | |||||||| ||||||||||||| |||| ||||||| |
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| T |
21370453 |
tggacatgaacagacgaaaataccc-tcagggtcttagtcaaacgtgaaatggcacatttaccct |
21370390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 48528665 - 48528715
Alignment:
| Q |
28 |
aaaatacccctaaaggtcttagccaaacgtgaaatgacacaattaccctta |
78 |
Q |
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||||||||||| | ||||||||||||||| |||||||||| ||||||||| |
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| T |
48528665 |
aaaatacccctgagggtcttagccaaacgcaaaatgacacatttaccctta |
48528715 |
T |
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