View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9727_high_2 (Length: 274)
Name: NF9727_high_2
Description: NF9727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9727_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 5508499 - 5508757
Alignment:
| Q |
1 |
tcaaaagaatgagcaagtttcaacgtagtatttgacattgcactacgaaaatctaactaatttaaaaaccaaatttccaacattatcaataaattcacac |
100 |
Q |
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| T |
5508499 |
tcaaaagaatgagcaagtttcaacatagtatttgacattgcactacgaaaatctaactaatttaaaaaccagatttccaacattatcaataaattcacac |
5508598 |
T |
|
| Q |
101 |
tatacgaacaaatgttgagaagattcgaataatccacatccactaacacaatgtaactctaaaagaacttctccataagttgcaaggttatcttcaaagg |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
5508599 |
tatacaaacaaatgttgagaagattcgaataatccacatccactaacacgatgtaactctaaaagaacttctccataacttgcaaggttatcttcagagg |
5508698 |
T |
|
| Q |
201 |
gactctatcatgcagtaacctccacaaaagcaagaaacattcaacaaaactattttatt |
259 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5508699 |
gactctatcatgcagtaacctccacaaaagcgagaaacattcaacaaaactattttatt |
5508757 |
T |
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