View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9727_low_2 (Length: 395)
Name: NF9727_low_2
Description: NF9727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9727_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 3376228 - 3375846
Alignment:
| Q |
1 |
catttgttccaaataatcaagtacaagggttatcttttcttcttgaaaggaatggaagattgaattgatatcaaagtcaagtagaatggaagatcaatca |
100 |
Q |
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| T |
3376228 |
catttgttccaaataatcaagtacaagggttatcttttcttcttgaaaggaatggaagattgaattgatatcaaagtcaagtagaatggaagatcaatca |
3376129 |
T |
|
| Q |
101 |
tccattcaattccaaccacaaactatctttctttctagctcaagagattggtagagaaagaaaatagcgataattgaattctaagaatttaatttgtgat |
200 |
Q |
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| T |
3376128 |
tccattcaattccaaccacaaactatctttctttctagctcaagagattggtagagaaagaaaataacgataattgaattctaagaatttaatttgtgat |
3376029 |
T |
|
| Q |
201 |
taaagtggtttagtgttattgagagaaaccaaaagaggaactagaaaagaatataaaaggaatgaaatttgggtttgatgagaatgagttagagaaaatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3376028 |
taaagtggtttagtgttattgagagaaaccaaaagaggaactagaaaagaatataaaaggaatgaaatttgggtttgatgagaatgagttatagaaaatg |
3375929 |
T |
|
| Q |
301 |
gttgaataatatatgctatgataaaataacacacacgtacactctctcttttcaacaaacgaaacttcaatggaaactctctc |
383 |
Q |
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||||||||||| |||||| || |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
3375928 |
tttgaataatatgctatatgatcaataaacacacacgcacacactctctcttcaacaaacgaaacttcaatggaaactctctc |
3375846 |
T |
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