View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9727_low_3 (Length: 374)
Name: NF9727_low_3
Description: NF9727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9727_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 37957600 - 37957959
Alignment:
| Q |
1 |
ttcttgagcacttgcttgtctctgttagtcacaatgattatactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957600 |
ttcttgagcacttgcttgtctctgttagtcacaatggttctactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaat |
37957699 |
T |
|
| Q |
101 |
ctttcacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957700 |
ctttcacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttc |
37957799 |
T |
|
| Q |
201 |
tgataagtattttcttcgtacatggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957800 |
tgataagtattttcttcgtacatggtctagtccagctctttcgatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagttta |
37957899 |
T |
|
| Q |
301 |
tgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957900 |
tgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
37957959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 37929977 - 37929628
Alignment:
| Q |
7 |
agcacttgcttgtctctgttagtcacaatgattatactcccttggccaaa--gttactatgatgtgttccaattaaatcttcaagttgatcagaatcttt |
104 |
Q |
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| T |
37929977 |
agcacttgcttgtctctactactcacaatgattctactcccaaggccaaaaaggtactacga------ccaattaaaccttcaagttgatctgaatcgtt |
37929884 |
T |
|
| Q |
105 |
cacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttctgat |
204 |
Q |
| |
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||| ||||||||||||||||||| |||| |||| ||||||||| ||||||| ||| || |||||||||||||||||| |||||||||| |||| |
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| T |
37929883 |
cacgtcatcaagaacaaggagaacctttcctcgttgaagccttggaatgtatgaaaacttgaatccagaggatgtaatgtcttcctctagaagttgtgat |
37929784 |
T |
|
| Q |
205 |
aagtattttcttcgtacatggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgat |
304 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| || || ||||| |
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| T |
37929783 |
aagtattttctttgtacatggcgtagtccagctctttctatttcttgttgagcatttagaatgatgcttttggaactgaactgagttgagaattgatgat |
37929684 |
T |
|
| Q |
305 |
agattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
360 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
37929683 |
agattgcattggcaattgttgttttgcctatccctcccatgccccgtattcctatg |
37929628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 44644432 - 44644770
Alignment:
| Q |
17 |
tgtctctgttagtcacaatgattatactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatcaag |
116 |
Q |
| |
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|||||||| |||||||||||||| |||| ||| | |||| |||||| | | |||||||||||||| ||||||||| |||| || ||||||||||| |
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| T |
44644432 |
tgtctctgctagtcacaatgattctactacctggtgcaaacttactaagct---ttccaattaaatctctaagttgatccgaattgttaacatcatcaag |
44644528 |
T |
|
| Q |
117 |
aacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttctgataagtattttctt |
216 |
Q |
| |
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|||||||||| ||| |||| |||||||||| |||||||||||| | || ||||||||| ||| ||| | ||||| || || ||||| ||| |
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| T |
44644529 |
aacaaggagagccttagtccatttgagcctttgatcaaatgaaagacataatccagaggatgtgttgttttctcccagaagctcaaatctatatttgctt |
44644628 |
T |
|
| Q |
217 |
cgtacatggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactgg |
316 |
Q |
| |
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||| ||||| |||||| ||| ||||||||||||| |||||||| | |||||| | ||||||| || ||||| | ||| |||| |||||||| | |
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| T |
44644629 |
tgtatatggtgcagtccaaatctctctatttcttgttgaacatttaggatgatgctgttaaaactgaattgggttgccaatttgcgatatattgcactag |
44644728 |
T |
|
| Q |
317 |
caattgttgttttgcctgtccctcccatgccccatattccta |
358 |
Q |
| |
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||||||||||||| ||| | |||||||| ||||| ||||||| |
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| T |
44644729 |
caattgttgttttccctattcctcccataccccagattccta |
44644770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 34727847 - 34727887
Alignment:
| Q |
316 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
356 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |
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| T |
34727847 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34727887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 34731005 - 34731045
Alignment:
| Q |
316 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
356 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |
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| T |
34731005 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34731045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 18928879 - 18928839
Alignment:
| Q |
316 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
356 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||||||| |
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| T |
18928879 |
gcaattgttgttttgccgatccctcccataccccatattcc |
18928839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 34735604 - 34735640
Alignment:
| Q |
316 |
gcaattgttgttttgcctgtccctcccatgccccata |
352 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
34735604 |
gcaattgttgttttgccgatccctcccatgccccata |
34735640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 360
Target Start/End: Complemental strand, 25721351 - 25721219
Alignment:
| Q |
228 |
tagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgtt |
327 |
Q |
| |
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||||||| |||||| ||||||||||| |||||||| | ||||| || ||| |||| |||||||| | | ||||| ||||||| ||||||| ||| |
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| T |
25721351 |
tagtccaactctttttatttcttgttcaacatttagtatcatgctgctagaattgaattgagttgcaaacctgtgatatattgcacgggcaatttcggtt |
25721252 |
T |
|
| Q |
328 |
ttgcctgtccctcccatgccccatattcctatg |
360 |
Q |
| |
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|||||| | |||||||| ||||| ||||||||| |
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| T |
25721251 |
ttgcctattcctcccataccccaaattcctatg |
25721219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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