View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9727_low_5 (Length: 359)
Name: NF9727_low_5
Description: NF9727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9727_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 18977088 - 18976755
Alignment:
| Q |
16 |
ttatcagtattcggtaaagcaccttaatccaacttatatgtagtctttttaatggtcaaactctctcaatgaaagcaccaatgttagggtggtgtttcaa |
115 |
Q |
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| T |
18977088 |
ttatcagtattcggtaaagcaccttaatccaacctatatgtagtctttttcatggtcaaactctctcaatgaaagcaccaatgttagggtagtgtttcaa |
18976989 |
T |
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| Q |
116 |
gtgaaaatttaagaacttacaaaagtcagaaatcaagataggaaaacaaaatatcagataaggaattggatcaactttattcatgtttatttcattctca |
215 |
Q |
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| T |
18976988 |
gtgaaaatttaagaacttgcaaaattcagaaatcaagataggaaaacagaatatcagataaggaattggatcaactttattcatgtttatttcattctca |
18976889 |
T |
|
| Q |
216 |
aagatattggaatatagtaacaaaattctagaaacataataattaagtgacttaattataattagaccagcaaataggctttctagtcacatatttgggt |
315 |
Q |
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| T |
18976888 |
aatatattggaatatagtaacaaaattctagaaacataataattaagtgacttaattataattagaccagcaaataggctttctagtcacatatttgggt |
18976789 |
T |
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| Q |
316 |
ttttcattcttgtgagtgcttgggtccattgcct |
349 |
Q |
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| T |
18976788 |
ttttcattcttgtgagtgcttgggtccattgcct |
18976755 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 14914373 - 14914420
Alignment:
| Q |
33 |
agcaccttaatccaacttatatgtagtctttttaatggtcaaactctc |
80 |
Q |
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| T |
14914373 |
agcaccttaatccaacctatatgtagtctttttcatggtccaactctc |
14914420 |
T |
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