View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9727_low_6 (Length: 327)
Name: NF9727_low_6
Description: NF9727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9727_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 37957610 - 37957303
Alignment:
| Q |
1 |
gtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaacaaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957610 |
gtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaacaaaacc |
37957511 |
T |
|
| Q |
101 |
atccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttcagggcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957510 |
atccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttcagggcag |
37957411 |
T |
|
| Q |
201 |
aaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagcttccccatgatgaaattttcagtgcgttcaagttgagttatgatggacttgacaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957410 |
aaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagctttcccatgatgaaattttcagtgcgttcaagttgagttatgatggacttgacaac |
37957311 |
T |
|
| Q |
301 |
gagcaaaa |
308 |
Q |
| |
|
|||||||| |
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| T |
37957310 |
gagcaaaa |
37957303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 37929980 - 37930269
Alignment:
| Q |
8 |
agaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaacaaaaccatccaat |
107 |
Q |
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|||||| |||||| |||||||||||| |||| | ||||||| || ||||||||||||| |||||||||||| | |||||||||||||||| ||||||| |
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| T |
37929980 |
agaatgccaatgccgatgaaatatatgaagttagggagatggattttcaagattctctacaactcttctgtttaagtgcttttaaacaaaactatccaat |
37930079 |
T |
|
| Q |
108 |
agaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttcagggcagaaaagag |
207 |
Q |
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| || |||||||||| |||||| ||||||||||| |||||||||| || ||||| |||| || ||||||||||| ||| |||| ||||||| | || |
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| T |
37930080 |
ataaacttatgtgagcttatcagaaaaggtattaaattatgctaaaggagttccattagctctcaaagttttgggattattgcttcttggcagaacaaag |
37930179 |
T |
|
| Q |
208 |
gaagcatgggaaagtcatttgcaaaagctcgaaaagcttccccatgatgaaattttcagtgcgttcaagttgagttatgatggacttgac |
297 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| || | ||| ||||| | ||| ||||| |||||||||| ||||||| |
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| T |
37930180 |
aaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgatgaacttgac |
37930269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 19869274 - 19869328
Alignment:
| Q |
17 |
atgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaact |
71 |
Q |
| |
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||||||||||||||||| |||| ||||||||| || ||||||||||||| |||| |
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|
| T |
19869274 |
atgctgatgaaatatatgaagtgaatgagatgaattttcaagattctctacaact |
19869328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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