View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9727_low_9 (Length: 228)
Name: NF9727_low_9
Description: NF9727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9727_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29695410 - 29695189
Alignment:
| Q |
1 |
cttgagaaaagtttataaagagaagaaaatcttcacctc-acatgtcggtaaaaaacaccccatgatcttcggtatttcatattcttatgtgtgatgctt |
99 |
Q |
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| T |
29695410 |
cttgagaagagtttataaagagtagacaatcctcacctgtacaagtcggtaaaaaacaccccatgatcttcggtatttcatattcttatgtgtgatgatt |
29695311 |
T |
|
| Q |
100 |
ttcatacaatattttttgtttgtttgtaattttcagagttagaaatgtagatacgttcctacttgaggggatattagaggtaagtttgttaagagttgtt |
199 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29695310 |
ttcatacaatattttttgtttgtttgtaattttgagagttagaaatgtagatacgttcctacttgaggggatattagaggtaagtttcttaagagttgtt |
29695211 |
T |
|
| Q |
200 |
aataattagttaagttagttat |
221 |
Q |
| |
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||||||||||||| |||||||| |
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| T |
29695210 |
aataattagttaaattagttat |
29695189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 29695187 - 29695144
Alignment:
| Q |
180 |
taagtttgttaagagttgttaataattagttaagttagttatct |
223 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
29695187 |
taagtttcttaagagttgttaataattagttaaattagttatct |
29695144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 40840638 - 40840599
Alignment:
| Q |
171 |
tattagaggtaagtttgttaagagttgttaataattagtt |
210 |
Q |
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|
| T |
40840638 |
tattagagataagtttcttaagagttgttaataattagtt |
40840599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 40138854 - 40138897
Alignment:
| Q |
180 |
taagtttgttaagagttgttaataattagttaagttagttatct |
223 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||| ||||| |
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|
| T |
40138854 |
taagtttgttaagagatgttaatagttagttaagttaggtatct |
40138897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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