View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9729_high_2 (Length: 745)
Name: NF9729_high_2
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 221 - 469
Target Start/End: Original strand, 28635790 - 28636038
Alignment:
| Q |
221 |
ttgatgttgaattgttggtatgttatgtatattttagttgggaggtccaaacattgaaatgaagagtggaagaagggatagcaaagaaagctatgcaact |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
28635790 |
ttgatgttgaattgttggtatgttttgtatattt-agttgggtggtccaaacattgaaatgaagagtggaagaagggatagcaaagaaagttatgcaaat |
28635888 |
T |
|
| Q |
321 |
gtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgttttcaagctattggtgttgacgttgaagccacggttgctcttt |
420 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28635889 |
gtggtggaagaattcattccaaaccataatgactcaatatccttagtgttgtctcgttttcaagctatcggtgttgacgttgaagccacggttgctcttt |
28635988 |
T |
|
| Q |
421 |
taggtaccaaacattcttc-tggctaattggtttttgactttcagttaca |
469 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28635989 |
taggtaccaaacattcttcttggctaattggtttttgactttcagttaca |
28636038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 232 - 453
Target Start/End: Original strand, 28656308 - 28656529
Alignment:
| Q |
232 |
ttgttggtatgttatgtatattttagttgggaggtccaaacattgaaatgaagagtggaagaagggatagcaaagaaagctatgcaactgtggtggaaga |
331 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
28656308 |
ttgttggtgcgttttgtatattt-agttgggaattccaaacattgaaatgaagagtggaagaagggatagcaaagaaagctatgtaacggtggtggaaga |
28656406 |
T |
|
| Q |
332 |
attaattccaaaccataatgactcaatatccttagtgctctctcgttttcaagctattggtgttgacgttgaagccacggttgctcttttaggtaccaaa |
431 |
Q |
| |
|
|| ||||||| |||||||| ||| || |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28656407 |
atccattccaagccataatgcctccatgtccttagtgctcactcgtttccaagctattggtgttgatgttgaagccacggttgctcttttaggtaccaaa |
28656506 |
T |
|
| Q |
432 |
cattcttc-tggctaattggttt |
453 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
28656507 |
cattcttcttggctaattggttt |
28656529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 217 - 437
Target Start/End: Original strand, 28605878 - 28606095
Alignment:
| Q |
217 |
gatgttgatgttgaattgttggtatgttatgtatattttagttgggaggtccaaacattgaaatgaagagtggaagaagggatagcaaagaaagctatgc |
316 |
Q |
| |
|
|||||||||||||| |||| || |||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
28605878 |
gatgttgatgttga--tgtttgtctgttctgtatatta-agttgggaggtccaaactttgaaatgaagagtggacgaaaggatagcaaagaaagctatgt |
28605974 |
T |
|
| Q |
317 |
aactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgttttcaagctattggtgttgacgttgaagccacggttgct |
416 |
Q |
| |
|
|| ||||||||| |||| |||||||| ||||||||||||||||||| |||||| ||| |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28605975 |
aaaggtggtggaacaattcattccaaatcataatgactcaatatcctcagtgctttctagttttcaagccattggcattgacgttgaagccacggttgct |
28606074 |
T |
|
| Q |
417 |
cttttaggtaccaaacattct |
437 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
28606075 |
cttttaggtaccaaatattct |
28606095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 534 - 739
Target Start/End: Original strand, 28636105 - 28636333
Alignment:
| Q |
534 |
aaatggaaggatgcccaatgtaggcagaaacaa---caatacaacataagtgaactctgatta---ataatgtaacattt-----------------gat |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||||| ||| |
|
|
| T |
28636105 |
aaatggaaggatgcccaatgtaggcagaaacaaagacaatacaacataagtggacactgattattaataatgtaacattttattaactggtcactttgat |
28636204 |
T |
|
| Q |
611 |
tgaatcaggagcacactcagttggaagagtacactgcatgaatttagtccacagactgtaccccacagtggacccaacgctagaccctacacatgctgcc |
710 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||| |||||||||||| || |
|
|
| T |
28636205 |
taaatcaggagcacactcagttggaagagtacattgcatgaatttggtccacagactataccccacagtggatccaacgttagatcctacacatgctacc |
28636304 |
T |
|
| Q |
711 |
tacctaaaacgtagatgcccaacaccaaa |
739 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
28636305 |
tacctaaaacgtaggtgcccaacaccaaa |
28636333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 255 - 427
Target Start/End: Original strand, 28663370 - 28663542
Alignment:
| Q |
255 |
tagttgggaggtccaaacattgaaatgaagagtggaagaagggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgact |
354 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| |||||||| ||||||||||| ||| ||| |||| |||||||| |||||||| |||||||||| |
|
|
| T |
28663370 |
tagttgggaggtccaaaatttgaaatgaagacaggacgaagggatggcaaagaaagccatgtaacaatggtagaagaattcattccaaatcataatgact |
28663469 |
T |
|
| Q |
355 |
caatatccttagtgctctctcgttttcaagctattggtgttgacgttgaagccacggttgctcttttaggtac |
427 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
28663470 |
ccatatccttagtgctttctcgttttcaagccattggtgtagacgttgaagcaactgttgctcttttaggtac |
28663542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 605 - 739
Target Start/End: Original strand, 28606414 - 28606548
Alignment:
| Q |
605 |
tttgattgaatcaggagcacactcagttggaagagtacactgcatgaatttagtccacagactgtaccccacagtggacccaacgctagaccctacacat |
704 |
Q |
| |
|
||||||| ||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
28606414 |
tttgattcaattaggagcacactcggttggaagagtacattgcatgaatttggtccacagactataccccacagtggatccaacgttagatcctacacat |
28606513 |
T |
|
| Q |
705 |
gctgcctacctaaaacgtagatgcccaacaccaaa |
739 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
28606514 |
gctgcctacctaaaacgtaggtgcccaacaccaaa |
28606548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 607 - 740
Target Start/End: Original strand, 28656695 - 28656828
Alignment:
| Q |
607 |
tgattgaatcaggagcacactcagttggaagagtacactgcatgaatttagtccacagactgtaccccacagtggacccaacgctagaccctacacatgc |
706 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||| | ||||||||||| ||||| | ||||||||||||||||||||||||| ||| |
|
|
| T |
28656695 |
tgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtccacagactataccctatagtggacccaacgctagaccctacatatgt |
28656794 |
T |
|
| Q |
707 |
tgcctacctaaaacgtagatgcccaacaccaaac |
740 |
Q |
| |
|
|| |||||||||||||||||| |||| ||||||| |
|
|
| T |
28656795 |
tgtctacctaaaacgtagatgtccaaaaccaaac |
28656828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 605 - 739
Target Start/End: Original strand, 28663769 - 28663903
Alignment:
| Q |
605 |
tttgattgaatcaggagcacactcagttggaagagtacactgcatgaatttagtccacagactgtaccccacagtggacccaacgctagaccctacacat |
704 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||| ||||||||| | ||||| ||||| |||||||| |||||||||| ||||||||| ||| || |
|
|
| T |
28663769 |
tttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatatggtccatagactataccccacggtggacccaaagctagaccccacatat |
28663868 |
T |
|
| Q |
705 |
gctgcctacctaaaacgtagatgcccaacaccaaa |
739 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| |
|
|
| T |
28663869 |
gctgcctatctaaaacttagatgcccaacaccaaa |
28663903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 28635630 - 28635703
Alignment:
| Q |
75 |
tcacatagtgaaacttataagtcaaatgattatccctcttaatagaataatttcttaagttgggacgtctaata |
148 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
28635630 |
tcacatagtgagactaataagtcaaatgattatccaacttaatagaataattttttaaattgggacgcctaata |
28635703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 465 - 509
Target Start/End: Original strand, 28636063 - 28636107
Alignment:
| Q |
465 |
ttacattaacatttactttcaaaagtcaaacataaacataataaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28636063 |
ttacattaacatttactttcaaaagtcaaccataaacataataaa |
28636107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 28635752 - 28635791
Alignment:
| Q |
170 |
caaagaattaccatggaaatagtatgagtaattaatattt |
209 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
28635752 |
caaagaattaccttagaaatagtatgagtaattaatattt |
28635791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 28656553 - 28656602
Alignment:
| Q |
465 |
ttacattaacatttactttcaaaagtcaaacataaacataataaaccacc |
514 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
28656553 |
ttacataaacatttactgtcaaaacacaaacataaacataattaaccacc |
28656602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University