View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_high_5 (Length: 508)
Name: NF9729_high_5
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 27 - 490
Target Start/End: Original strand, 9700629 - 9701091
Alignment:
| Q |
27 |
catagggccattttgaacatatggacgaggcaaatttattggtcaactcatttcaatattttaacttttgtaaattatgtaaatgcccctacaatgttca |
126 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9700629 |
cataaggccattttgaacatatggacgaggcaaattcattggtcaactcatttcaatattttaacttttgtaaattatgtaaatgcccctacaatattca |
9700728 |
T |
|
| Q |
127 |
aagatatatattgaatcaactcatttcaatagttttaacattttaaaaagacgaaaactccttatcgtctaggcaacatttttcnnnnnnnntaatagat |
226 |
Q |
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| T |
9700729 |
aaaatacatattgaatcaactcatttcaatagttttaacattttaaaaagacgaaaactccttatcgtctaggcaacatttttcgaaaaaaataataggt |
9700828 |
T |
|
| Q |
227 |
attgaatcaacttatctactcgtctagatcatagatacaaaataaaattcactgctccgaaaaatttcaaaaacactaaagtttgaaaacaattcgatta |
326 |
Q |
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| T |
9700829 |
atcgaatcaacttatctactcgtctagatcatcgatacaaaataaaactcactgctccaaaaaatttcaaaaactctaaagtttgaaaacaattcgatta |
9700928 |
T |
|
| Q |
327 |
tcaatatttttatactttaagactcacaagggcggccaacaacacatgacatcagtgacgaaaatcaaaactcaacactcttagccaatagaacaccaaa |
426 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9700929 |
tcaatattgttatactttaagactcacaagggcgaccaacaacacatgacatcagtgacgaaaatcaaaactcaacactcttagccaacagaacaccaaa |
9701028 |
T |
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| Q |
427 |
atcacactttaaagagaagaaaaaggggagaaatacatctacaatgacaatgggttatgtgcat |
490 |
Q |
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| T |
9701029 |
atcacactttaaagagaagaaaaaggggagaaatacatc-acaatgacaataggttatgtgcat |
9701091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 27 - 490
Target Start/End: Original strand, 13566868 - 13567330
Alignment:
| Q |
27 |
catagggccattttgaacatatggacgaggcaaatttattggtcaactcatttcaatattttaacttttgtaaattatgtaaatgcccctacaatgttca |
126 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13566868 |
cataaggccattttgaacatatggacgaggcaaattcattggtcaactcatttcaatattttaacttttgtaaattatgtaaatgcccctacaatattca |
13566967 |
T |
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| Q |
127 |
aagatatatattgaatcaactcatttcaatagttttaacattttaaaaagacgaaaactccttatcgtctaggcaacatttttcnnnnnnnntaatagat |
226 |
Q |
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| T |
13566968 |
aaaatacatattgaatcaactcatttcaatagttttaacattttaaaaagacgaaaactccttatcgtctaggcaacatttttcgaaaaaaataataggt |
13567067 |
T |
|
| Q |
227 |
attgaatcaacttatctactcgtctagatcatagatacaaaataaaattcactgctccgaaaaatttcaaaaacactaaagtttgaaaacaattcgatta |
326 |
Q |
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| T |
13567068 |
atcgaatcaacttatctactcgtctagatcatcgatacaaaataaaactcactgctccaaaaaatttcaaaaactctaaagtttgaaaacaattcgatta |
13567167 |
T |
|
| Q |
327 |
tcaatatttttatactttaagactcacaagggcggccaacaacacatgacatcagtgacgaaaatcaaaactcaacactcttagccaatagaacaccaaa |
426 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13567168 |
tcaatattgttatactttaagactcacaagggcgaccaacaacacatgacatcagtgacgaaaatcaaaactcaacactcttagccaacagaacaccaaa |
13567267 |
T |
|
| Q |
427 |
atcacactttaaagagaagaaaaaggggagaaatacatctacaatgacaatgggttatgtgcat |
490 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
13567268 |
atcacactttaaagagaagaaaaaggggagaaatacatc-acaatgacaataggttatgtgcat |
13567330 |
T |
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