View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_high_6 (Length: 399)
Name: NF9729_high_6
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 31 - 392
Target Start/End: Original strand, 47571746 - 47572107
Alignment:
| Q |
31 |
tttcatttatagtaagaggatgtggacaccctaaattttgtcctcaaccaaaagtagccaagattgtttaataattttcacatgattatacctagtgggt |
130 |
Q |
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| T |
47571746 |
tttcatttatagtaagaggatgtggacaccctaaattttgtcctcaaccaaaagtagccaagattgtttaataattttcacatggttatacctagtgggt |
47571845 |
T |
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| Q |
131 |
ggggctactataatcattaaactacatgaagcttaaaaaagaaaacatatatataagccagtaccaacatttgagctcctagttcaccccaattatggaa |
230 |
Q |
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| T |
47571846 |
ggggctactataatcattaaactacatgaagcttaaaaaagaaaacatatatataagccagtaccaacatttgagctcctagttcaccccaagtatggaa |
47571945 |
T |
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| Q |
231 |
tccttccatttgctacttacacttccaactttcttttccctcttttttcactgctttccttctcccatcatactagctgctgctaatgatgcaacacatc |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
47571946 |
tccttccatttgctacttacacttccaactttcttttccctcttttttcactgctttccttctcccatcatacaagctcctgctaatgatgcaacacatc |
47572045 |
T |
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| Q |
331 |
cttactataactgcacaaggaacattacttctgcttccgattatgcttaccgttccaacgtc |
392 |
Q |
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| T |
47572046 |
cttactataactgcacaaggaacattacttctgcttccggttatgcttaccgttccaacgtc |
47572107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 47581644 - 47581767
Alignment:
| Q |
231 |
tccttccatttgctacttacacttccaactttcttttccctcttttttcactgctttccttctcccatcatactagctgctgctaatgatgcaacacatc |
330 |
Q |
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|||||||||||||| || |||| |||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||| | || ||| |||||| |
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| T |
47581644 |
tccttccatttgctgtttttacttgcaactttcttttccctctttgttcattgctctccttctcccatcatacaagctgctattgataatggcacacatg |
47581743 |
T |
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| Q |
331 |
cttactataactgcacaaggaaca |
354 |
Q |
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| T |
47581744 |
ctttctataactgcacacggaaca |
47581767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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