View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_low_1 (Length: 834)
Name: NF9729_low_1
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 787; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 1 - 819
Target Start/End: Original strand, 36170626 - 36171444
Alignment:
| Q |
1 |
aaagtttgtgttttacttcatctagctctgtaagtattttaatgagttatggttttgtggatcagttgctatattatgttcgacacggtgaagtttcgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170626 |
aaagtttgtgttttacttcatctagctctgtaagtattttaatgagttatggttttgtggatcagttgctatattatgttcgacacggtgaagtttcgat |
36170725 |
T |
|
| Q |
101 |
tcaagagttggctttgaaagtggcatttagattatctggaacatccgaagaagctaagaaagcaatgggagatgccggttttatggcagaatttgttaag |
200 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36170726 |
tcaagagttagctttgaaagtggcatttagattatctggaacatccgaagaagctaagaaagcaatgggagatgccggttttatggtagaatttgttaag |
36170825 |
T |
|
| Q |
201 |
tttctcaatgcgaaatcatttgaagttcgcgaaatggcagctgaagcactctccggcatggtcacggtacctagaaatagaaagaggtttgttcaagatg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170826 |
tttctcaatgcgaaatcatttgaagttcgcgaaatggcagctgaagcactctccggcatggtcacggtacctagaaatagaaagaggtttgttcaagatg |
36170925 |
T |
|
| Q |
301 |
atcataacatagccctgcttctgcaattgcttgatccagaagagggaaattcaggtaacaaaaagttcttaatctctatcttaatgtcattgacaagttg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170926 |
atcataacatagccctgcttctgcaattgcttgatccagaagagggaaattcaggtaacaaaaagttcttaatctctatcttaatgtcattgacaagttg |
36171025 |
T |
|
| Q |
401 |
caatagtgcaaggaaaaagattgttagctctggttatgccaaaaacatagacaaactagcagatgctgaagtatcttgtgatgctaaaaaacttgtcaag |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36171026 |
caatagtgcaaggaaaaagattgttagctctggttatgccaaaaacatagacaaactagcagatgctgaagtatcttgtgatgctaaaaaacttgtcaag |
36171125 |
T |
|
| Q |
501 |
aaactatccacaaacagattccgcagtatgttgaatggaatctggcactcatgaatgtaattcatcaattatttttctctcnnnnnnnnaactgtatatt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
36171126 |
aaactatccacaaacagattccgcagtatgttgaatggaatctggcactcatgaatgtaattcatcaattatttttctctcttttttttaactgtatatt |
36171225 |
T |
|
| Q |
601 |
tactttagtgtcttacaagttttgctaatttgtttatccctattcaatatgctttctgtttaatttcattggcctttgcctatgataacagtagcacaca |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36171226 |
tactttagtgtcttacaagttttgctaatttgtttatccctattcaatatgctttctgtttaatttcattggcctttgcctatgataacagtagcacaca |
36171325 |
T |
|
| Q |
701 |
ccattatgttgattgtaatcagagttagtgatgataccataaaagctttgttgtagattttcatgaagatactctctgccattactgtgagactattagc |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171326 |
ccattatgttgattgtaatcagagttagtgatgataccataaaagctttgttgtagattttcatgaagatactctctgccattactgtgagactattagc |
36171425 |
T |
|
| Q |
801 |
tatggtagattgtacctaa |
819 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
36171426 |
tatggtagattgtacctaa |
36171444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 23 - 819
Target Start/End: Complemental strand, 1286394 - 1285597
Alignment:
| Q |
23 |
tagctctgtaagtattttaatgagttatggttttgtggatcagttgctatattatgttcgacacggtgaagtttcgattcaagagttggctttgaaagtg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286394 |
tagctctgtaagtattttaatgagttatggttttgtggatcagttgctatattatgttcgacacggtgaagtttcgattcaagagttggctttgaaagtg |
1286295 |
T |
|
| Q |
123 |
gcatttagattatctggaacatccgaagaagctaagaaagcaatgggagatgccggttttatggcagaatttgttaagtttctcaatgcgaaatcatttg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
1286294 |
gcatttagattatctggaacatccgaagaagctaagaaagcaatgggagatgccggttttatggaagaatttgttaagtttctcaatgcgaaatcatttg |
1286195 |
T |
|
| Q |
223 |
aagttcgcgaaatggcagctgaagcactctccggcatggtcacggtacctagaaatagaaagaggtttgttcaagatgatcataacatagccctgcttct |
322 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286194 |
aagttcgagaaatggcagctgaagcactctccggcatagtcacagtacctagaaatagaaagaggtttgttcaagatgatcataacatagccctgcttct |
1286095 |
T |
|
| Q |
323 |
gcaattgcttgatccagaagagggaaattcaggtaacaaaaagttcttaatctctatcttaatgtcattgacaagttgcaatagtgcaaggaaaaagatt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1286094 |
gcaattgcttgatccagaagagggaaattcaggtaacaaaaagttcttaatctctatcttaatgtcattgacaagttgcaatagtgcacggaaaaagatt |
1285995 |
T |
|
| Q |
423 |
gttagctctggttatgccaaaaacatagacaaactagcagatgctgaagtatcttgtgatgctaaaaaacttgtcaagaaactatccacaaacagattcc |
522 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||| |||||||||| |||||||||||| ||||| |
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|
| T |
1285994 |
gttagttctggttatgccaaaaacatagacaaactagcagaggctgaaatttcttgtgatcctaaaaaacctgtcaagaaattatccacaaacaaattcc |
1285895 |
T |
|
| Q |
523 |
gcagtatgttgaatggaatctggcactcatgaatgtaattcatcaattatttttctctcnnnnnnnnaactgtatatttactttagtgtcttacaagttt |
622 |
Q |
| |
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| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||| |
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| T |
1285894 |
gaagtatgttgaatggaatccggcactcatgaatgtaattcatcaattatttttatct-ttttttaaaactgtata-ttactttagtgtcttacaaattt |
1285797 |
T |
|
| Q |
623 |
tgctaatttgtttatccctattcaatatgctttctgtttaatttcattggcctttgcctatgataacagtagcacacacc----attatgttgattgtaa |
718 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||| |||||||| ||| ||| |||||||||||||||| |
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| T |
1285796 |
tgctaatttgtttatccccattcaatatgctttctgttttatttcattggcc-ttgtctatgacaacagtaggacataccattaattatgttgattgtaa |
1285698 |
T |
|
| Q |
719 |
tcagagttagtgatgataccataaaagctttgttgtagattttcatgaagatactctctgccattactgtgagactattagctatggtagattgtaccta |
818 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
1285697 |
tcagagttagcgatgataccatagaatctttgttgtagattttcatgaagatactctctgccattgctgtgagaatattagctatggtagattgtaccta |
1285598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 569628 - 569570
Alignment:
| Q |
315 |
ctgcttctgcaattgcttgatccagaagagggaaattcaggtaacaaaaagttcttaat |
373 |
Q |
| |
|
||||| |||||||||||||||| |||||||| | || |||||||||||||||||||||| |
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|
| T |
569628 |
ctgctgctgcaattgcttgatctagaagaggaacatacaggtaacaaaaagttcttaat |
569570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 569505 - 569446
Alignment:
| Q |
447 |
atagacaaactagcagatgctgaagtatcttgtgatgctaaaaaacttgtcaagaaacta |
506 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
569505 |
atagagaaactggcagaggctgaagtttcttctgatgctaaaaaacttgtctggaaacta |
569446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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