View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_low_10 (Length: 386)
Name: NF9729_low_10
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 4495788 - 4496148
Alignment:
| Q |
12 |
ttggagtaggagaagtgagactattacagtaacccaaagcaaaagatttggaactgagctcgaagtttgagcataaaaattcatattggtggttccactc |
111 |
Q |
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| T |
4495788 |
ttggagtaggagaagtgagactattacagtaacccaaagcaaaagatttggaactgagctcgaagtttgagcataaaaattcatattggtggttccactc |
4495887 |
T |
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| Q |
112 |
tattaaagtaatattaagaattaaagttctatgagacttatattatgcatacataaataaaatgaaagtatgtgaaactgatatgaatacacacatttat |
211 |
Q |
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| T |
4495888 |
tattaaagtaatattaagaattaaagttctatgagacttatattatgcatacataaataaaatgaaattatgtgaaactgatatgaatacacacatttat |
4495987 |
T |
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| Q |
212 |
atgcatggtaaagggaaaggtcaatggtcataatcataattccacagtggaataatgctaaggatgg--nnnnnnnntggaatgttagtgagtttgtgag |
309 |
Q |
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| T |
4495988 |
atgcatggtaaagggaaaggtcaatggtcataatcacaattccatagttgaataatgctaaggatggaaaaaaaaaatggaatgttagtgagtttgtgag |
4496087 |
T |
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| Q |
310 |
aatggtcatgctgttagtattaaccagcaatttaagtatcttaattgaaatgtcaacttgg |
370 |
Q |
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| T |
4496088 |
aatggtcatgctgttagtattaaccagcaatttaagtatcttaattgaaatgtcaacttgg |
4496148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 4501350 - 4501545
Alignment:
| Q |
20 |
ggagaagtgagactattacagtaacccaaagcaaaagatttggaactgagctcgaagtttgagcataaaaattcatattggtggttccactctatta-aa |
118 |
Q |
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| T |
4501350 |
ggagaagtgagattattagaggaagcaaaagcaaaagatttggaactgagttccaagtttgagcataaaaattcatattggtgattccaatgtattataa |
4501449 |
T |
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| Q |
119 |
gtaatattaagaattaaagttctatgagacttatattatgcatacataaataaaatgaaagtatgtgaaactgatatgaatacacacatttatatgcatg |
218 |
Q |
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| T |
4501450 |
agaactttaagaatttaaactctaacagactgatattatgcatatataaataaaatgaaagcatg------taatatgaatacacacatttatatgtatg |
4501543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 4508585 - 4508669
Alignment:
| Q |
22 |
agaagtgagactattacagtaacccaaagcaaaagatttggaactga---gctcgaagtttgagcataaaaattcatattggtgg |
103 |
Q |
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| T |
4508585 |
agaagtgagattattagaggaagccatagcaaaagatttggaactgaattcctccaagtttgagcagaaaacttcatattggtgg |
4508669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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