View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_low_11 (Length: 367)
Name: NF9729_low_11
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_11 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 76 - 367
Target Start/End: Original strand, 29001917 - 29002205
Alignment:
| Q |
76 |
gttgtttatgtcaaagactctgaattgttctgtgacgaattcatcactcacccatcacagaaaaaatgcagcaaggaggactattattccttgacagatt |
175 |
Q |
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| T |
29001917 |
gttgttgatgtcaaagactctgaattgttctgtgacgaattcatcactcacccatcacagaaaaaatgcagcaaggaggactatt---ccttgacagatt |
29002013 |
T |
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| Q |
176 |
ctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactccccggattccag |
275 |
Q |
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| T |
29002014 |
ctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactccccggattccgg |
29002113 |
T |
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| Q |
276 |
cgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaggagaaaacaaagaagccatatctaaagaaaagtg |
367 |
Q |
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| T |
29002114 |
cgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaagagaaaacaaagaagccatatctaaagaaaagtg |
29002205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 165 - 367
Target Start/End: Original strand, 28962280 - 28962482
Alignment:
| Q |
165 |
cttgacagattctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactcc |
264 |
Q |
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| T |
28962280 |
cttgccagattctgacgacaaagttaaagacttcagattattctgcaacaaattcatcgatgatccatcaccggaaaaatgttgcaacgattataacttg |
28962379 |
T |
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| Q |
265 |
ccggattccagcgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaggagaaaacaaagaagccatatctaaagaaaa |
364 |
Q |
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| T |
28962380 |
ccggactcaggtgataaaggtgatgatgacagtttagaagcaacatggaaagcaataatggaagcacaggagaaaacaaagaagccacatctgaagaaaa |
28962479 |
T |
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| Q |
365 |
gtg |
367 |
Q |
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||| |
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| T |
28962480 |
gtg |
28962482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 28962206 - 28962262
Alignment:
| Q |
187 |
gttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaa |
243 |
Q |
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| T |
28962206 |
gttaaagactctgaattgttccacaacaaattcatcactgatccgattccggaaaaa |
28962262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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