View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_low_15 (Length: 297)
Name: NF9729_low_15
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 28226003 - 28225732
Alignment:
| Q |
12 |
cagagaccaaaagatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaac |
111 |
Q |
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| T |
28226003 |
cagagaccaaaagatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaac |
28225904 |
T |
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| Q |
112 |
aatccttaatacccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttccgcaagagcggcatattcaccg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28225903 |
aatccttaatacccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttccgcaagagcggcatattcaccg |
28225804 |
T |
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| Q |
212 |
ctgcttctgcaatcaacagctcttgtttgagtagctgttttcagatattgcaacagaaatcttgtaaagatt |
283 |
Q |
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| T |
28225803 |
ctgcttctgcaatcaacagctcttgtttgagtagctgttttcagatattgcaacagaaatcttgtaaagatt |
28225732 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 13040643 - 13040809
Alignment:
| Q |
23 |
agatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaacaatccttaata |
122 |
Q |
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|||||||||| ||| |||| |||| ||| ||||| |||||||| |||| |||| |||| ||| ||||||| | |||||| | || | |||||||| | |
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| T |
13040643 |
agatcatccaatgttgctttatcaaacattccacctatcaatttctccatttcatttctacaatctttacttattccaaactttgataaaatccttagca |
13040742 |
T |
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| Q |
123 |
cccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttc |
189 |
Q |
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| T |
13040743 |
cacaaaaaaggcctctacatgaaaaattcttgtcaccaacatttatgactccatgagcagctgtttc |
13040809 |
T |
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