View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_low_20 (Length: 218)
Name: NF9729_low_20
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 11230344 - 11230490
Alignment:
| Q |
12 |
agcagagacggggaatcactcctaagcaaccaccgttggatataggaatccatacatgaccttgttttgttgaaattatcagaaaaataaatggacaatg |
111 |
Q |
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| T |
11230344 |
agcagagacggggaatcactcctaagcaaccatcgttggatataggaatccatacatgaccttgttttgttgaaattatcagaaaaataaatggataatg |
11230443 |
T |
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| Q |
112 |
cttttccaacatgcttggttcgaaacttggacttggtgcgtgaataa |
158 |
Q |
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| T |
11230444 |
cttttccaacatgcttggttcgaaacttggacttggtgcgtgaataa |
11230490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 11230899 - 11230946
Alignment:
| Q |
155 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11230899 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagact |
11230946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 11243086 - 11243133
Alignment:
| Q |
155 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagact |
202 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||| ||||| |
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| T |
11243086 |
ataacagcaccaatcacacaaagatacattgtatgttggtctgagact |
11243133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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