View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_low_3 (Length: 700)
Name: NF9729_low_3
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Original strand, 34759874 - 34760562
Alignment:
| Q |
1 |
atctggtacatgaggtgcgcacacatttatatttgcctttgctccaaagtattgatttccatttacaaaaagaattgcatgctgtaataagattaataag |
100 |
Q |
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| T |
34759874 |
atctgttacatgaggtgcccacacatttatgtttgcctttgctccaaagtattgatttccatttacaaaaagaattgcatgctgtaataagattaataag |
34759973 |
T |
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| Q |
101 |
atgcatttaaggttgttaatagacagatatgcggcaataaacatagccccnnnnnnnnnnnnnnn--gctagaaaagt----catgtttggcatccaata |
194 |
Q |
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| T |
34759974 |
atgcatttaaggttgttaatagacagatatgcagcaataaacatagccctttttctttttagtttttgctagaaaagttatacatgtttggcatccaata |
34760073 |
T |
|
| Q |
195 |
accaatgtaggtacaagaagatccttctcgtgtaatacaggattttgatattacttttctgaacaaataagagacaaacaaacacaagtggtgatgtccc |
294 |
Q |
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| T |
34760074 |
accaatgtaggtacaagaagatccttctcgtgtaattcaggattttgatattacttttctgaacaaacaagagacaaacaaacataagtggtgatgtccc |
34760173 |
T |
|
| Q |
295 |
ttcactgtctgttaaggtagtgctgttcttttctttctgggaaagaaaatgtggggaatgaaagaaaaattagaggcaaagattttcctcgtaaatgaat |
394 |
Q |
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| T |
34760174 |
ttcactgtctgttaaggtagtgctgttcttttctttctggga---------------atgaaagaaaaattagaggcaaagattttcctcgtaaatgaat |
34760258 |
T |
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| Q |
395 |
gcacaatttggattgttaacgcaactaaaaaacacaattaaccataatttacaacatgattaatcatatattcaaattgtgttgaccatccaaattgttg |
494 |
Q |
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| T |
34760259 |
gcacaatttggattgttaacgcaactaaaaaacacaattaaccataatttacaacatgattaatcatatattcaaattgtgctaaccatccaaattgttg |
34760358 |
T |
|
| Q |
495 |
ttgaaatttactgtcaaatttatgtgtaaaaatatcattgaggttactgttttctaaatatcttaaactttgatattgaatttgaaggcactgacctcat |
594 |
Q |
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| T |
34760359 |
ttgaaatttactgtcaaatttatgtgtaaaaatatcattgaggttactattttctaaatatcttaaactttgatattgaatttgaaggcactgacctcat |
34760458 |
T |
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| Q |
595 |
gatcactactagttgaatctctccgaacaggttttggtttccttccaaatcttttgatagaacttgctcttagaatatcatcttctgatgtccatctcat |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| || |
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| T |
34760459 |
gatcactactagttgaatctctccgaacaggttttggtttccttccaaatcttttgatagaacttgctcttagaatatcatcttctgttgttcttctgat |
34760558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 43729114 - 43729184
Alignment:
| Q |
20 |
cacacatttatatttgcctttgctccaaagtattgatttccatttacaaaaagaattgcatgctgtaataa |
90 |
Q |
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| T |
43729114 |
cacacatttatgcttgcttttgctccatagtattgttctccatttacaaaaacaactgcatgctgcaataa |
43729184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 527
Target Start/End: Original strand, 35223743 - 35223789
Alignment:
| Q |
481 |
catccaaattgttgttgaaatttactgtcaaatttatgtgtaaaaat |
527 |
Q |
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| T |
35223743 |
catccaaatttttgttgaaatttattgtcaaatttatttgtcaaaat |
35223789 |
T |
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