View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_low_5 (Length: 528)
Name: NF9729_low_5
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 10784316 - 10784820
Alignment:
| Q |
18 |
catacttggactttgctgtaaaggtcaccaaagatattgattctcatcttgccaaggaatagcaacaaagatgaacaaggatgaagtgtgtttggcttga |
117 |
Q |
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| T |
10784316 |
catacttggaccttgctgtaaaggtcacaaaagatattgattctcatcttgccaaggaatagcaacaaagatgaacaaggatgaagtgtgtttgtcttga |
10784415 |
T |
|
| Q |
118 |
gtgttattgcatattaaataa-ctttttgtgatgaatgtgtttaatacaatataagtaaacttctaattttgggattcggattccttgctgccggggggt |
216 |
Q |
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| T |
10784416 |
gtgttattgcattttaaataaactttttgtgatgaatgtgtttaatacagtattggtatacttctaattttgggattgagattccttgctgccaaggggt |
10784515 |
T |
|
| Q |
217 |
cccacattcatacattgtgaagatcgatagttgttcgatgaagatcagcca-tccaaaaaatgcagttcttatgatttattttatgattaagataccaaa |
315 |
Q |
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| T |
10784516 |
cccacattcatacattgtgaagatcgatagtttttcgatgaagatcagatagtccataaaatgcagttcttatggtttattttatgattaagacatcaaa |
10784615 |
T |
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| Q |
316 |
tttgaatcttgattgttcgatccagatcaaacaaccaccgatgttccaattctgtgaatgcggagaaatattcatatcgtggtaattggagacagaatag |
415 |
Q |
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| T |
10784616 |
tttgaatcttgattgttcgatccagatcaaacaaccaccgatgttccaattgtgtgaatacggagaaatattcatatcgtggtaattggagacagaaaag |
10784715 |
T |
|
| Q |
416 |
gattttactcttgtgttgttttatgttttttctgtcacaaacatgcttgtttctttcaacaaagtcactcattctagtttgtgatggaatagagtcttgc |
515 |
Q |
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| T |
10784716 |
gagtttactcttatgttgttttatgttttttcagtcacaaacatgcttgtttctttcaacaaagtcactcattctagtttgtgatggaatagagtcttgc |
10784815 |
T |
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| Q |
516 |
tgatt |
520 |
Q |
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| T |
10784816 |
tgatt |
10784820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 10777533 - 10777676
Alignment:
| Q |
18 |
catacttggactttgctgtaaaggtcaccaaagatattgattctcatcttgccaaggaatagcaacaaagatgaacaaggatgaagtgtgtttggcttga |
117 |
Q |
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| T |
10777533 |
catacttggactttgctgtaaagctcataaaagatattgattctcatcttgtcaaggaatagcaacaaagatgaacaaggatgaagtgtgtttggcttga |
10777632 |
T |
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| Q |
118 |
gtgttattgcatattaaat-aacttttt-gtgatgaatgtgttt |
159 |
Q |
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| T |
10777633 |
gtgttattgcatattaaataaactttttggtgatgaatgtgttt |
10777676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 10772251 - 10772306
Alignment:
| Q |
23 |
ttggactttgctgtaaaggtcaccaaagatattgattctcatcttgccaaggaata |
78 |
Q |
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||||| ||||||| ||||||||| |||||||||||| |||||||| ||||||||| |
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| T |
10772251 |
ttggaatttgctgcaaaggtcacaaaagatattgatgctcatcttatcaaggaata |
10772306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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