View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9729_low_8 (Length: 489)
Name: NF9729_low_8
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 14 - 483
Target Start/End: Complemental strand, 39790233 - 39789764
Alignment:
| Q |
14 |
catcaccaccacagaaatcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatc |
113 |
Q |
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| T |
39790233 |
catcaccaccacagaaatcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatc |
39790134 |
T |
|
| Q |
114 |
cacttcttcactctgcatcattctattcatcacactgaactcatcatagctttcttcatcttcaatatcactttcttccacatcttcctcttcttcacgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39790133 |
cacttcttcactctgcatcattctattcatcacactgaactcatcatagccttcttcatcttcaatatcactttcttccacatcttcctcttcttcacgc |
39790034 |
T |
|
| Q |
214 |
aagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaagagtccatataac |
313 |
Q |
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| T |
39790033 |
aagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaagagtccatataac |
39789934 |
T |
|
| Q |
314 |
ttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaaaccctttgttttgactttcaag |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39789933 |
ttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaaaccctttgttttgtctttcaag |
39789834 |
T |
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| Q |
414 |
gtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatgatgatgt |
483 |
Q |
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| T |
39789833 |
gtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatgatgatgt |
39789764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 202 - 476
Target Start/End: Original strand, 39411722 - 39411978
Alignment:
| Q |
202 |
tcttcttcacgcaagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaag |
301 |
Q |
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||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||| || ||||||||| || |||||||||| |||||||||| |
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| T |
39411722 |
tcttcttcacgcaagcctgtttgctttgaaagagagaaagatggaatggtctctagtgcgaagcctctttgt---ctcactgaataccttttagaagaag |
39411818 |
T |
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| Q |
302 |
agtccatataacttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaa---acccttt |
398 |
Q |
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| T |
39411819 |
agtccatat------------------tgttgttacaattagtggcataggctaagtcttccaagttcccttcagattgaactcttctaatcaacccttt |
39411900 |
T |
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| Q |
399 |
gttttgactttcaaggtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatg |
476 |
Q |
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| T |
39411901 |
gttttgtctttcaagatcagaaatggaaggagaaattggagaagaagtgcatgagagtttgtgattgtgatgatgatg |
39411978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 39411547 - 39411631
Alignment:
| Q |
30 |
atcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatcc |
114 |
Q |
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|||||||||||||||||||||||||||||| || |||| ||||| || |||||||||| |||||||||||||| ||||||||||| |
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| T |
39411547 |
atcaacaccaagtccctttgcaagatacatttctttattaccaacctttccctcctcaccaaaactcaccctgaaaactctatcc |
39411631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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