View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9729_low_9 (Length: 399)
Name: NF9729_low_9
Description: NF9729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9729_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 31 - 392
Target Start/End: Original strand, 47571746 - 47572107
Alignment:
| Q |
31 |
tttcatttatagtaagaggatgtggacaccctaaattttgtcctcaaccaaaagtagccaagattgtttaataattttcacatgattatacctagtgggt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47571746 |
tttcatttatagtaagaggatgtggacaccctaaattttgtcctcaaccaaaagtagccaagattgtttaataattttcacatggttatacctagtgggt |
47571845 |
T |
|
| Q |
131 |
ggggctactataatcattaaactacatgaagcttaaaaaagaaaacatatatataagccagtaccaacatttgagctcctagttcaccccaattatggaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47571846 |
ggggctactataatcattaaactacatgaagcttaaaaaagaaaacatatatataagccagtaccaacatttgagctcctagttcaccccaagtatggaa |
47571945 |
T |
|
| Q |
231 |
tccttccatttgctacttacacttccaactttcttttccctcttttttcactgctttccttctcccatcatactagctgctgctaatgatgcaacacatc |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
47571946 |
tccttccatttgctacttacacttccaactttcttttccctcttttttcactgctttccttctcccatcatacaagctcctgctaatgatgcaacacatc |
47572045 |
T |
|
| Q |
331 |
cttactataactgcacaaggaacattacttctgcttccgattatgcttaccgttccaacgtc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47572046 |
cttactataactgcacaaggaacattacttctgcttccggttatgcttaccgttccaacgtc |
47572107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 47581644 - 47581767
Alignment:
| Q |
231 |
tccttccatttgctacttacacttccaactttcttttccctcttttttcactgctttccttctcccatcatactagctgctgctaatgatgcaacacatc |
330 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||| | || ||| |||||| |
|
|
| T |
47581644 |
tccttccatttgctgtttttacttgcaactttcttttccctctttgttcattgctctccttctcccatcatacaagctgctattgataatggcacacatg |
47581743 |
T |
|
| Q |
331 |
cttactataactgcacaaggaaca |
354 |
Q |
| |
|
||| ||||||||||||| |||||| |
|
|
| T |
47581744 |
ctttctataactgcacacggaaca |
47581767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University