View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_high_1 (Length: 740)

Name: NF9730_high_1
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_high_1
NF9730_high_1
[»] chr4 (1 HSPs)
chr4 (16-730)||(46450045-46450759)


Alignment Details
Target: chr4 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 16 - 730
Target Start/End: Original strand, 46450045 - 46450759
Alignment:
Q  16 atattgacctttacttactattttcagctgattttggttgctttaattacaatgactgtctttttccgaacaactatgcaccatgatacaattgatgatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46450045 atattgacctttacttactattttcagctgattttggttgctttaattacaatgactgtctttttccgaacaacgatgcaccatgatacaattgatgatg 46450144  T
Q  116 gaggcttataccttggagcactgtatttttctatgattactattcttttcaatggttttacggaagtgtcaatgttagttgcaaagcttccagttcttta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46450145 gaggcttataccttggagcactgtatttttctatgattactattcttttcaatggttttacggaagtgtccatgttagttgcaaagcttccagttcttta 46450244  T
Q  216 caaacacagagactttcatttctatcctagctttgcatatgcactctcgtcttggttcctcagtatcccaacttctctcatggaggctggatgctgggta 315  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46450245 caaacacagagactttcatttctatcctagctgggcatatacactcccttcttggttcctcagtatcccaacttctctcatggaggctggatgctgggta 46450344  T
Q  316 ctggtatcgtactatgccagtggatacgatcctgcatttactaggtaattaatcttatgttcacgtagtgttttcatgtattctaagagtttctcttgag 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46450345 ctggtatcgtactatgccagtggatacgatcctgcatttactaggtaattaatcttatgttcacgtagtgttttcatgtattctaagagtttctcttgag 46450444  T
Q  416 taactatttttgtgtctatcttgatctgcagatttcttcggcaattcttgcnnnnnnnctttctgcatcagatgtccataggtttgtttcgcttgatagg 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  46450445 taactatttttgtgtctatcttgatctgcagatttcttcggcaattcttgctttttttctttctgcatcagatgtccataggtttgtttcgcttgatagg 46450544  T
Q  516 atccttgggtcggaatatgatagtagccaatacctttggatcatttgccatgttggttgtaatggctcttggcggatatataatttcaaaaggttaactg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46450545 atccttgggtcggaatatgatagtagccaatacctttggatcatttgccatgttggttgtaatggctcttggcggatatataatttcaaaaggttaactg 46450644  T
Q  616 caatctctgaatgtttcaaaattcgttttggtaaactaattttctgactgtaacttattttgaggcagaccgtataccaagttggtggatatggggcttt 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46450645 caatctctgaatgtttcaaaattcgttttggtaaactaattttctgactgtaacttattttgaggcagaccgtataccaagttggtggatatggggcttt 46450744  T
Q  716 tgggtttctcctttg 730  Q
    |||||||||||||||    
T  46450745 tgggtttctcctttg 46450759  T

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