View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_high_18 (Length: 345)
Name: NF9730_high_18
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 42540893 - 42540757
Alignment:
| Q |
17 |
catagacacagtcacaccctcaacctcgtttccatcgacaccaatatactaactaaatcacacttcaaaaaccctattccaacacattttcattttcatt |
116 |
Q |
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| T |
42540893 |
catagacacagtcacaccctcaacctcgtttccatcgacaccaatatactaactaaatcacacttcaaaaaccctattccaacacattttcattttcatt |
42540794 |
T |
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| Q |
117 |
ttcattcctattggtattggtaggtataaatcttcaactac |
157 |
Q |
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| T |
42540793 |
----ttcctattggtattggtaggtataaatcttcaactac |
42540757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 217 - 338
Target Start/End: Complemental strand, 42540694 - 42540573
Alignment:
| Q |
217 |
tctctgttagttaaattacagaaacaattatggaggcaacaatgtccgcagcctgcaattctctcaactcaccatccaccgtcacagtaactcacaatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42540694 |
tctctgttagttaaattacagaaacaattatggaggcaacaatgtccgcagcctgcaattctctcacctcaccatccaccgtcacagtaactcacaatta |
42540595 |
T |
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| Q |
317 |
cttcatctattaattcatctca |
338 |
Q |
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|||||||||||||||||||||| |
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| T |
42540594 |
cttcatctattaattcatctca |
42540573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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