View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_high_24 (Length: 311)

Name: NF9730_high_24
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_high_24
NF9730_high_24
[»] chr6 (3 HSPs)
chr6 (107-306)||(493210-493409)
chr6 (64-106)||(28502329-28502371)
chr6 (64-106)||(29814735-29814777)
[»] chr8 (3 HSPs)
chr8 (64-103)||(15001340-15001379)
chr8 (63-105)||(41709648-41709690)
chr8 (64-105)||(45446326-45446367)
[»] scaffold0050 (1 HSPs)
scaffold0050 (67-105)||(43135-43173)
[»] chr5 (4 HSPs)
chr5 (59-105)||(22432469-22432515)
chr5 (64-105)||(548219-548260)
chr5 (64-105)||(24181793-24181834)
chr5 (64-104)||(37148757-37148797)
[»] chr3 (4 HSPs)
chr3 (63-105)||(53557966-53558008)
chr3 (64-105)||(20609805-20609846)
chr3 (64-105)||(28675662-28675703)
chr3 (64-105)||(34026554-34026595)
[»] chr2 (4 HSPs)
chr2 (63-105)||(32497786-32497828)
chr2 (64-105)||(5279012-5279053)
chr2 (64-105)||(33889129-33889170)
chr2 (64-109)||(34338677-34338722)
[»] scaffold0280 (1 HSPs)
scaffold0280 (64-105)||(13870-13911)
[»] chr7 (4 HSPs)
chr7 (64-105)||(10932736-10932777)
chr7 (64-105)||(16962987-16963028)
chr7 (64-105)||(36769748-36769789)
chr7 (64-105)||(40753045-40753086)
[»] chr4 (3 HSPs)
chr4 (64-105)||(21579900-21579941)
chr4 (64-113)||(24002204-24002253)
chr4 (66-103)||(28115153-28115190)
[»] chr1 (4 HSPs)
chr1 (64-105)||(1351687-1351728)
chr1 (64-105)||(7183798-7183839)
chr1 (64-105)||(34663822-34663863)
chr1 (66-110)||(39281770-39281814)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 493210 - 493409
Alignment:
Q  107 taatgatttcctatcaatattttcctttaatgacttgatcaaacaaatannnnnnnnnatgatttgaa---cacaattaaattaattcctttttgttttg 203  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||   |||||||||||||||||||||||||||||    
T  493210 taatgacttcctatcaatattttcctttaatgacttgatcaaacaaataattttttttatgatttgaagaacacaattaaattaattcctttttgttttg 493309  T
Q  204 aaaaaatttcggatcttaaagatagtattaaatgctacatgtttttgttgtgtctaaaatactactagaatgaaaagattatgacacgtaatttttgtga 303  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  493310 aaaaaatttcggatcttaaagattgtattaaatgctacacgtttttgttgtgtctaaaa---tactagaatgaaaagattatgacacgtaatttttgtga 493406  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 28502371 - 28502329
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcacccc 106  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||    
T  28502371 tgttctgtccagtacttactgttttgcaaaccaaacacacccc 28502329  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 29814777 - 29814735
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcacccc 106  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||    
T  29814777 tgttctgtccagtacttactgttttgcaaaccaaacacacccc 29814735  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 15001379 - 15001340
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcac 103  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  15001379 tgttctgtccagtacttactgttttgcaaaccaaacgcac 15001340  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 41709690 - 41709648
Alignment:
Q  63 ttgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    |||||||||| |||||||| ||||||||||||||||| |||||    
T  41709690 ttgttctgtccagtacttactgttttgcaaaccaaacacaccc 41709648  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 45446367 - 45446326
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  45446367 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 45446326  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 43135 - 43173
Alignment:
Q  67 tctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  43135 tctgtctagtacttactgttttgcaaaccaaacgcaccc 43173  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 22432469 - 22432515
Alignment:
Q  59 tgtgttgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    |||| ||||||||| |||||||| |||||| ||||||||||||||||    
T  22432469 tgtgctgttctgtctagtacttactgttttacaaaccaaacgcaccc 22432515  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 548260 - 548219
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  548260 tgttctgtccagtacttaatgttttgcaaaccaaacacaccc 548219  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 24181793 - 24181834
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  24181793 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 24181834  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 37148757 - 37148797
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcacc 104  Q
    |||| |||| |||||||| ||||||||||||||||||||||    
T  37148757 tgttttgtccagtacttactgttttgcaaaccaaacgcacc 37148797  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 53557966 - 53558008
Alignment:
Q  63 ttgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    |||||||||| |||||||| ||||||||||||||||| |||||    
T  53557966 ttgttctgtcaagtacttactgttttgcaaaccaaacacaccc 53558008  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 20609805 - 20609846
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  20609805 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 20609846  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 28675703 - 28675662
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  28675703 tgttctgtccagtacttattgttttgcaaaccaaacacaccc 28675662  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 34026595 - 34026554
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  34026595 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 34026554  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 32497828 - 32497786
Alignment:
Q  63 ttgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    |||||||||| |||||||| ||||||||||||||||| |||||    
T  32497828 ttgttctgtccagtacttactgttttgcaaaccaaacacaccc 32497786  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 5279012 - 5279053
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  5279012 tgttctgtcaagtacttactgttttgcaaaccaaacacaccc 5279053  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 33889170 - 33889129
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  33889170 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 33889129  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 34338722 - 34338677
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcacccctaa 109  Q
    ||||||||| |||||||  ||||||||||||||||| |||||||||    
T  34338722 tgttctgtccagtacttgttgttttgcaaaccaaacacacccctaa 34338677  T

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Target: scaffold0280 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 13870 - 13911
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||| |||||||||||    
T  13870 tgttctgtccagtacttactgttttgcaaatcaaacgcaccc 13911  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 10932736 - 10932777
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  10932736 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 10932777  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 16963028 - 16962987
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  16963028 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 16962987  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 36769748 - 36769789
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  36769748 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 36769789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 40753086 - 40753045
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  40753086 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 40753045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 21579941 - 21579900
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  21579941 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 21579900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 24002253 - 24002204
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcacccctaatgat 113  Q
    ||||||||| |||||||  ||||||||||||||||| ||||| |||||||    
T  24002253 tgttctgtccagtacttgctgttttgcaaaccaaacacacccttaatgat 24002204  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 28115190 - 28115153
Alignment:
Q  66 ttctgtcgagtacttagtgttttgcaaaccaaacgcac 103  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  28115190 ttctgtctagtacttactgttttgcaaaccaaacgcac 28115153  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 1351687 - 1351728
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  1351687 tgttctgtcaagtacttactgttttgcaaaccaaacacaccc 1351728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 7183839 - 7183798
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  7183839 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 7183798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 34663863 - 34663822
Alignment:
Q  64 tgttctgtcgagtacttagtgttttgcaaaccaaacgcaccc 105  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  34663863 tgttctgtccagtacttactgttttgcaaaccaaacacaccc 34663822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 39281814 - 39281770
Alignment:
Q  66 ttctgtcgagtacttagtgttttgcaaaccaaacgcacccctaat 110  Q
    ||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  39281814 ttctgtccagtacttactgttttgcaaaccaaacacacccttaat 39281770  T

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