View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_high_25 (Length: 306)
Name: NF9730_high_25
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 25882786 - 25883073
Alignment:
| Q |
1 |
aatttgctactgaagttcaagcaattgggaaagtgaaacatcctaatattgttaagttaagagcttattattgggctcatgatgaaaagcttttgatcag |
100 |
Q |
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| T |
25882786 |
aatttgctactgaagttcaagcaattgggaaagtgaaacatcctaatattgttaagttaagagcttattattgggctcatgatgaaaagcttttgattag |
25882885 |
T |
|
| Q |
101 |
tgattttgtttctaatggcaatttggctaatgctcttagaggtaatcagttcaatcaattcctttacattttgtgtttatgtttgtttgtatgtatctct |
200 |
Q |
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| T |
25882886 |
tgattttgtttctaatggcaatttggctaatgctcttagaggtaatcagttcaatcaattcctttacattttgtgtttatgtttgtttgtatgtatctct |
25882985 |
T |
|
| Q |
201 |
ttctgattttgcttttgggtcattgatttcatttgatgcatttgttcatgaagaggcttaacctccatttttacactcaccttcatag |
288 |
Q |
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| T |
25882986 |
ttctgattttgcttttgggtcattgatttcatttgttgcatttgttcatgaagaggcttaacctccatttttacactcaccttcatag |
25883073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 4031861 - 4031760
Alignment:
| Q |
24 |
attgggaaagtgaaacatcctaatattgttaagttaagagcttattattgggctcatgatgaaaagcttttgatcagtgattttgtttctaatggcaatt |
123 |
Q |
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|||||||| || || |||||||||||||| | ||| ||||||||||||||||| ||||||||||||||| | || ||||||||| |||| |||||||||| |
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| T |
4031861 |
attgggaaggttaagcatcctaatattgtgaggttgagagcttattattgggcacatgatgaaaagcttcttataagtgattttatttccaatggcaatt |
4031762 |
T |
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| Q |
124 |
tg |
125 |
Q |
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|| |
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| T |
4031761 |
tg |
4031760 |
T |
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