View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_high_28 (Length: 280)

Name: NF9730_high_28
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_high_28
NF9730_high_28
[»] chr3 (18 HSPs)
chr3 (1-266)||(19398630-19398912)
chr3 (1-266)||(19374605-19374862)
chr3 (147-266)||(19333047-19333165)
chr3 (1-70)||(18102348-18102417)
chr3 (184-266)||(18143390-18143472)
chr3 (172-261)||(18021952-18022041)
chr3 (171-266)||(18115038-18115133)
chr3 (171-266)||(19460608-19460700)
chr3 (172-250)||(18102538-18102615)
chr3 (172-261)||(18145934-18146020)
chr3 (192-266)||(19435995-19436069)
chr3 (11-70)||(17949303-17949363)
chr3 (172-219)||(18107542-18107589)
chr3 (11-70)||(19413062-19413121)
chr3 (133-176)||(19419015-19419058)
chr3 (172-219)||(19419084-19419131)
chr3 (135-174)||(24494369-24494408)
chr3 (11-52)||(19423468-19423509)
[»] chr6 (2 HSPs)
chr6 (172-261)||(13667686-13667775)
chr6 (172-223)||(13667837-13667888)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 19398630 - 19398912
Alignment:
Q  1 ataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatattattcaaagtctt--------------------gaagttttgg 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||     
T  19398630 ataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatattattcaaagtcttccctgcctattcaaagtcttgaagttttga 19398729  T
Q  81 aactatttcannnnnnnnctaacaatcagaccccatttgtatcaattgacactgttgtccacatactttcttatcaagccttttccaatttatcttatat 180  Q
    ||||||||||        ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19398730 aactatttcattttt---ctaacaatcagaccccatttgtatcaattgaaactgttgtccacatactttcttatcaagccttttccaatttatcttatat 19398826  T
Q  181 aagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19398827 aagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgaccat 19398912  T

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Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 19374605 - 19374862
Alignment:
Q  1 ataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatattattcaaagtcttgaagttttggaactatttcannnnnnnnct 100  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||   |||||||  |    ||   ||||||||        ||    
T  19374605 ataagttttgaataatttggtaccaagttttaaacatgaggttcaaagaaattatattataacaagtcttcca----tgc--ctatttcatttttt--ct 19374696  T
Q  101 aacaatcagaccccatttgtatcaattgacactgttgtccacatactttcttatcaagccttttccaatttatcttatataagcacattaaaatctcata 200  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19374697 aacaatcagaccccatttgtatcaatcgaaattgttgtccacatactttcttatcaagccttttccaatttatctaatataagcacattaaaatctcata 19374796  T
Q  201 ataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 266  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  19374797 acaaatcataatcccatttgaattagacattcttctttgattcaaacaattattcatcatgaccat 19374862  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 19333047 - 19333165
Alignment:
Q  147 tttcttatcaagccttttccaatttatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaa 246  Q
    ||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  19333047 tttcttagcaacctttttccaattt-tcttatataagcacattaaaatctcataacaaatcataatcccatttgaattagatattcttctttgattcaaa 19333145  T
Q  247 caattattcatgatgtccat 266  Q
    ||||||||||||||| ||||    
T  19333146 caattattcatgatgaccat 19333165  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 18102348 - 18102417
Alignment:
Q  1 ataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatattattcaaagtctt 70  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  18102348 ataagttttgaataatttggcaccaagtttaaaacatgaggttcaaagaaattatattattccaagtctt 18102417  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 18143390 - 18143472
Alignment:
Q  184 cacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 266  Q
    |||||||||||||||||| || ||||||| | |||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  18143390 cacattaaaatctcataacaactcataattccatttgaattagatattcttctctgattcaaacaattattcatgatgaccat 18143472  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 18021952 - 18022041
Alignment:
Q  172 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatg 261  Q
    ||||||||||| |||| ||||||||||||| |||||||||| | | ||||||||||  ||||||| ||||||||||||||||||| ||||    
T  18021952 atcttatataaccacagtaaaatctcataacaaatcataataccaattgaattagatcttcttctctgattcaaacaattattcacgatg 18022041  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 18115038 - 18115133
Alignment:
Q  171 tatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 266  Q
    ||||||||||||||||||||||||||||||  |||||||| |   |||||||||| |  ||||||| ||||||||||||| |||||||||| ||||    
T  18115038 tatcttatataagcacattaaaatctcataccaaatcatattttcatttgaattacatcttcttctctgattcaaacaatcattcatgatgaccat 18115133  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 19460608 - 19460700
Alignment:
Q  171 tatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 266  Q
    ||||||||||||||||||||||||||||||  |||||||| |   ||||||||||   | |||||| ||||||||||||| |||||||||| ||||    
T  19460608 tatcttatataagcacattaaaatctcataccaaatcatattttcatttgaatta---aatcttctctgattcaaacaatcattcatgatgaccat 19460700  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 18102538 - 18102615
Alignment:
Q  172 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaat 250  Q
    ||||||||||||||||||||| |||||||  ||||||||||   ||||||||||||  ||||||| |||||||||||||    
T  18102538 atcttatataagcacattaaa-tctcataccaaatcataatttcatttgaattagatcttcttctctgattcaaacaat 18102615  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 18145934 - 18146020
Alignment:
Q  172 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatg 261  Q
    ||||||||| | ||| ||||||||| |||| |||||||||| | ||||||||||||   ||||||  |||||||||||| ||||||||||    
T  18145934 atcttatatgaccactttaaaatcttataacaaatcataataccatttgaattaga---tcttctcagattcaaacaatcattcatgatg 18146020  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 19435995 - 19436069
Alignment:
Q  192 aatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 266  Q
    |||||| ||| || ||| ||||| ||||||||||||  ||||||| ||||||||||||||||||| |||| ||||    
T  19435995 aatctcttaacaagtcacaatcccatttgaattagatcttcttctctgattcaaacaattattcaagatgaccat 19436069  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 17949303 - 17949363
Alignment:
Q  11 aataatttggtaccaagtttaaaacttgagg-ttcaaagaaattatattattcaaagtctt 70  Q
    |||||||||| |||||||||||||| ||||| |||||||||||| ||| |||| |||||||    
T  17949303 aataatttggcaccaagtttaaaacatgaggtttcaaagaaattttataattctaagtctt 17949363  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 18107542 - 18107589
Alignment:
Q  172 atcttatataagcacattaaaatctcataataaatcataatccaattt 219  Q
    ||||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  18107542 atcttatataaccacattgaaatctcataacaaatcataatcccattt 18107589  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 19413062 - 19413121
Alignment:
Q  11 aataatttggtaccaagtttaaaacttgaggttcaaagaaattatattattcaaagtctt 70  Q
    |||||||||| ||||| |||||||| |||| |||||||||||| ||| |||| |||||||    
T  19413062 aataatttggaaccaattttaaaacatgagcttcaaagaaattctataattccaagtctt 19413121  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 19419015 - 19419058
Alignment:
Q  133 tgttgtccacatactttcttatcaagccttttccaatttatctt 176  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||    
T  19419015 tgttgtccacatactttcttatcaaactttttccaatttgtctt 19419058  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 19419084 - 19419131
Alignment:
Q  172 atcttatataagcacattaaaatctcataataaatcataatccaattt 219  Q
    ||||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  19419084 atcttatataaccacattgaaatctcataacaaatcataatcccattt 19419131  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 24494408 - 24494369
Alignment:
Q  135 ttgtccacatactttcttatcaagccttttccaatttatc 174  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  24494408 ttgtccacatactttcttatcaagcttttttcaatttatc 24494369  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 19423468 - 19423509
Alignment:
Q  11 aataatttggtaccaagtttaaaacttgaggttcaaagaaat 52  Q
    |||||||||| ||||| |||||||| ||||||||||||||||    
T  19423468 aataatttggaaccaattttaaaacatgaggttcaaagaaat 19423509  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 13667775 - 13667686
Alignment:
Q  172 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatg 261  Q
    |||||||||||||||||| ||||||||| | ||||||||| |  ||||||||||||  ||||||| ||  ||||||||||||||||||||    
T  13667775 atcttatataagcacattgaaatctcatcacaaatcataaccatatttgaattagatcttcttctctgggtcaaacaattattcatgatg 13667686  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 13667888 - 13667837
Alignment:
Q  172 atcttatataagcacattaaaatctcataataaatcataatccaatttgaat 223  Q
    |||||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  13667888 atcttatataagcacattaaaatctcttaacaaatcataatcccatttgaat 13667837  T

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