View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_high_32 (Length: 262)
Name: NF9730_high_32
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 15944221 - 15944459
Alignment:
| Q |
14 |
gtttattggagaaagcttcaagatcaaaatagtaacaaggatttgcaaaagggtgttgttttggatagtcctagaaacaatgaaggttatgatcatgaag |
113 |
Q |
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| T |
15944221 |
gtttattggagaaagcttcaagatcaaaatattaacaaggatttgcaaaagggtgttgttttggatagtcctagaaacaatgaaggttatgatcatgaag |
15944320 |
T |
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| Q |
114 |
aaaatcaagaggaaaaatcaaagtctattcaagaaatgcatttgcttagaggaaaatcttcaacctctcacatgaatatttttccacaagaagagtcata |
213 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15944321 |
aaaatcaagaggaaaaatcagaatctattcaagaaatgcatttgcttagaggaaaatcttcaacctctcacatgaatatttttccacaagaagagtcgta |
15944420 |
T |
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| Q |
214 |
tacaattatgaaaattactcctcctgctcctcctcctat |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
15944421 |
tacaattatgaaaattactcctcctgctcctcctcctat |
15944459 |
T |
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Back To:
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 26282818 - 26282887
Alignment:
| Q |
106 |
tcatgaagaaaatcaagaggaaaaatcaaagtctattcaagaaatgcatttgcttagaggaaaatcttca |
175 |
Q |
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||||||||||||||||| | ||||||| ||||| ||||||||||| | | | |||||||||||||||||| |
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| T |
26282818 |
tcatgaagaaaatcaagtgaaaaaatctaagtccattcaagaaatacctcttcttagaggaaaatcttca |
26282887 |
T |
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