View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_high_37 (Length: 240)
Name: NF9730_high_37
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 31108868 - 31108648
Alignment:
| Q |
3 |
aaatataattatgcttgcattttgataactaagcaaaagtcatatgctatgtgagacatactaaagatgttggtggcatatggttcaggtttgaatctaa |
102 |
Q |
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| T |
31108868 |
aaatataattatgcttgcattttgataactaagcaaaagtcatatgctatgtgagacatactaaagatgttggtggcatatggttcaggtttgaatctaa |
31108769 |
T |
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| Q |
103 |
agatgcgaacctgcaaatcatgtttatgttatacataaatacatcctataaatagttaagacaaggtaatcatcagattttattaaatacaaaatcgaag |
202 |
Q |
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| T |
31108768 |
agatgcgaacctgcaaatcatgtttatgttatacataaatacatcctataaatagttaagacaaggtaatcatcagattttattaaatacaaaatcgaag |
31108669 |
T |
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| Q |
203 |
gaacctcaccgttccactctg |
223 |
Q |
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| T |
31108668 |
gaacctcaccgttccactctg |
31108648 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 9709797 - 9709849
Alignment:
| Q |
77 |
ggcatatggttcaggtttgaatctaaagatgcgaacctgcaaatcatgtttat |
129 |
Q |
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| T |
9709797 |
ggcatacggttcgggtttgaatctgaatatacgaacctgtaaatcatgtttat |
9709849 |
T |
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