View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_high_4 (Length: 558)
Name: NF9730_high_4
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 548
Target Start/End: Complemental strand, 2617933 - 2617407
Alignment:
| Q |
20 |
ccaatgcaccaggtccacactaaataaccaatttctaacttccaatcggattacattaatccataactccatagcattgagacagtcacacaagacacgt |
119 |
Q |
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| T |
2617933 |
ccaatgcaccaggtccacactaaataaccaatttctaacttccaatcggatgacattaatccataactccatagcattgagacacttgcgcaagacacgt |
2617834 |
T |
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| Q |
120 |
aatatgctttccacttcaatttcacaattcacacgccaaggattaccaattttcattttacttctctaaaagttggtcatcaaaagaatttcactctttc |
219 |
Q |
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| T |
2617833 |
aatatgctttccacttcaatttcacaattcacacaccaaggattaccaattttcattttacttctctaaaagttggtcatcaaaagaatttcactctttc |
2617734 |
T |
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| Q |
220 |
ttgaaccttaaaatgcaaaattttagaccaaagctcatgatttgtatcggagtattgaatcagcagaagctataatacgctgcagacactgagaattctc |
319 |
Q |
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| T |
2617733 |
ttgaaccttaagatgccaaattttagacc-aagctcatgatttgtatc--agtattgaatctgcagaggctatgataagctgcagacactgaaaattctc |
2617637 |
T |
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| Q |
320 |
catgaatatcaaccggccaacatctaacatcatcccctccatctctactaggtggaacaatagctatgattttctgcagcacatgcataggcagccaatc |
419 |
Q |
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| T |
2617636 |
caggaatatcacccggccaacatctaacatcatcccctccatctctactaggtggaacaatagctatga-tttctgcaccatatgcataggcagacaatc |
2617538 |
T |
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| Q |
420 |
actcgtcatccgcaaattccactccccattgtcatcaactagatcaacaactctatcattacgcaaatcacttggaatgttgacctccaaaaca---aca |
516 |
Q |
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| T |
2617537 |
actcatcgtcaacaaattccactccccgttgtcgtcaactagatcaacaactctatcattacgcaaatcactt-gaatgtcaacctccaaatcagctaca |
2617439 |
T |
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| Q |
517 |
caaagattacgagctatccaatttgatgtcca |
548 |
Q |
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| T |
2617438 |
caaagattacgagctatccaatttgaagtcca |
2617407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 42245484 - 42245573
Alignment:
| Q |
379 |
atagctatgattttctgcagcacat----gcataggcagccaatcactcgtcatccgcaaattccactccccattgtcatcaactagatc |
464 |
Q |
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|||| ||||||||||||||||| || | |||||||||||||||||| |||||| ||||||||||| ||| |||| |||||||||||| |
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| T |
42245484 |
atagttatgattttctgcagcatatatatgtataggcagccaatcactcatcatccacaaattccacttcccgttgttatcaactagatc |
42245573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 5245030 - 5245078
Alignment:
| Q |
431 |
gcaaattccactccccattgtcatcaactagatcaacaactctatcatt |
479 |
Q |
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|||||||| |||| ||||| ||||||||||||||||||||||| |||| |
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| T |
5245030 |
gcaaattctactctccattagcatcaactagatcaacaactctagcatt |
5245078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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