View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9730_high_8 (Length: 495)
Name: NF9730_high_8
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 398
Target Start/End: Complemental strand, 2792848 - 2792463
Alignment:
| Q |
17 |
gaagctgatgtgatttttcaaccaaaggaattatgattgctgcatgcataataaggtgaattag---gttttcaatcataacaacaataacaaataatat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
2792848 |
gaagctgatgtgatttttcaaccaaaggaattatgatttctgcatgcataataaggtgaattgttgagttttcaatggtaacaacaataacaaacaatat |
2792749 |
T |
|
| Q |
114 |
tacttaaactatgtgttaaag-gaacagttaccagcttgnnnnnnnncaaaagaagaaccacttagtttgagaatttctaagttaatgattttttgagac |
212 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2792748 |
tacttaaactatgtgttaaaaagaatagttaccagcttgttttttctcagaagaagaaccacttagtttgagaatttctaagttaatgattttttgagac |
2792649 |
T |
|
| Q |
213 |
aagaaaccaatggtgagaccggacatgagtccggaaaatagaacaataaaacagcagaagacagcgtaagcgatccatgttgccgacccaaaaggcatgc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2792648 |
aagaaaccaatggtgagaccggacatgagtccggaaaatagaacaataaaacagcagaagacagcgtaagcgatccatgttgccgacccaaaaggtatgc |
2792549 |
T |
|
| Q |
313 |
tttcgtgggcgagaacggacggatcacgagtcaatatccgactcaccgccaacgcatttatcaagttcatcattgtcatatggtag |
398 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2792548 |
tttcgtgggcgagaacggatggatcacgagtcaatatccgactcaccgccaacgcatttatcaagttcatcatcgtcatatggtag |
2792463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 16387912 - 16387794
Alignment:
| Q |
208 |
gagacaagaaaccaatggtgagaccggacatgagtccggaaaatagaacaataaaacagcagaagacagcgtaagcgatccatgttgccgacccaaaagg |
307 |
Q |
| |
|
|||||| || ||||| |||||||||||||||| ||||| ||| ||||||| ||||||||| | | |||||||| ||||||||||| || |||||||| |
|
|
| T |
16387912 |
gagacatgagaccaagtgtgagaccggacatgactccggcaaagagaacaagaaaacagcatattccggcgtaagcaatccatgttgcagaaccaaaagg |
16387813 |
T |
|
| Q |
308 |
catgctttcgtgggcgaga |
326 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
16387812 |
tatgccttcgttggcgaga |
16387794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 391
Target Start/End: Complemental strand, 48667324 - 48667212
Alignment:
| Q |
279 |
taagcgatccatgttgccgacccaaaaggcatgctttcgtgggcgagaacggacggatcacgagtcaatatccgactcaccgccaacgcatttatcaagt |
378 |
Q |
| |
|
||||||||||||||| | || |||||||| |||| ||| | ||||||| | ||||||||||||||||||||||||| | ||||||||| | ||| | |
|
|
| T |
48667324 |
taagcgatccatgttacggatccaaaaggtatgccttcattggcgagagataagtgatcacgagtcaatatccgactcactgtcaacgcattcagcaaat |
48667225 |
T |
|
| Q |
379 |
tcatcattgtcat |
391 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
48667224 |
tcaccatcgtcat |
48667212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University