View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_low_10 (Length: 502)

Name: NF9730_low_10
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_low_10
NF9730_low_10
[»] chr7 (2 HSPs)
chr7 (18-415)||(39962851-39963249)
chr7 (419-487)||(39742297-39742364)
[»] chr8 (4 HSPs)
chr8 (418-494)||(23828342-23828418)
chr8 (419-488)||(42315342-42315411)
chr8 (419-488)||(45244286-45244355)
chr8 (419-488)||(3193176-3193244)
[»] chr6 (4 HSPs)
chr6 (419-488)||(31665630-31665699)
chr6 (421-488)||(15296147-15296214)
chr6 (419-488)||(31442517-31442585)
chr6 (418-488)||(826734-826803)
[»] chr5 (3 HSPs)
chr5 (419-488)||(37337323-37337392)
chr5 (419-488)||(26110688-26110757)
chr5 (419-488)||(11300765-11300834)
[»] chr3 (8 HSPs)
chr3 (418-488)||(1529164-1529234)
chr3 (419-488)||(22424372-22424440)
chr3 (442-488)||(37605422-37605468)
chr3 (419-484)||(52041390-52041454)
chr3 (419-466)||(49235500-49235547)
chr3 (419-488)||(39484810-39484879)
chr3 (419-488)||(1141744-1141812)
chr3 (419-488)||(15291461-15291528)
[»] chr2 (3 HSPs)
chr2 (419-488)||(32281486-32281554)
chr2 (419-488)||(28926075-28926143)
chr2 (419-488)||(38996522-38996590)
[»] chr1 (4 HSPs)
chr1 (419-488)||(15700721-15700789)
chr1 (419-488)||(46555502-46555571)
chr1 (417-488)||(22964005-22964075)
chr1 (419-469)||(24819183-24819233)
[»] chr4 (4 HSPs)
chr4 (419-488)||(12094857-12094925)
chr4 (422-488)||(9451245-9451310)
chr4 (419-484)||(6898758-6898822)
chr4 (419-488)||(24257703-24257771)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 39962851 - 39963249
Alignment:
Q  18 aagcacttcatttaatttaaagtattcagcaactttagagaaattgtttaaaattgtttgttacttattacaaacattgtaaccaaagtttaggtgtgtt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39962851 aagcacttcatttaatttaaagtattcagcaacttaagagaaattgttttaaattgtttgttacttattaaaaacattgtaaccaaagtttaggtgtgtt 39962950  T
Q  118 gctcatatttgtttctatttcaattacaaattcgtgtttaaaattatgttttcctcttcctcatgttgtcaggcaggactagatcacccgtaggtatggt 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39962951 gctcatatttatttctatttcaattacaaattcgtgtttaaaattatgttttcctcttcctcatgttgtcaggcaggactagatcacccgtaggcatggt 39963050  T
Q  218 agtgaacatgttttcatggtcttgcatcaaagcaatctcaacaaataaagttcatctcttgtatcaccacttaatagcacatcacgataatgtaatgaag 317  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39963051 cgtgaacatgttttcatggtcttgcatcaaagcaacctcaacaaataaagttcatctcttgtatcaccacttaatagcacatcacgataatgtaatgaag 39963150  T
Q  318 gatgattcatgatgaaagtagaagaatcataacaacaacgacggtggaagagaatgataaagtagataaccaacggtgttaatcaaaa-ggagatgttt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  39963151 gatgattcatgatgaaagtagaagaatcataacaacaacgactaaggaaaagaatgacaaagtagataaccaacggtgttaatcaaaagggagatgttt 39963249  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 487
Target Start/End: Complemental strand, 39742364 - 39742297
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctc 487  Q
    |||||||||||||||| ||||||| ||||| |||| |||||||||| | ||||||||||||||||||||    
T  39742364 atctttcttactaaagcttgtttgatcaagctattgataaccctaa-tcttaacctaatattttccctc 39742297  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 418 - 494
Target Start/End: Original strand, 23828342 - 23828418
Alignment:
Q  418 catctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcctatgct 494  Q
    |||||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  23828342 catctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctccaatgct 23828418  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 42315342 - 42315411
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  42315342 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcc 42315411  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 45244355 - 45244286
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  45244355 atctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcc 45244286  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 3193244 - 3193176
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| |||| ||||||||  |||| | | | ||||||| |||||||||||||||||||    
T  3193244 atctttcttactaaagcttgtctggtcaagtaattattcatcttaatttt-aacctaatattttccctcc 3193176  T

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Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 31665699 - 31665630
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  31665699 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcc 31665630  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 488
Target Start/End: Original strand, 15296147 - 15296214
Alignment:
Q  421 ctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||| |||||| |||||| ||| | |||||||||||||||||||||||||||||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcc 15296214  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 31442517 - 31442585
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| |||||||||||||  || |   ||||||| |||||||||||||||||||||||    
T  31442517 atctttcttactaaagcttgtttggtcaagcaatcacataccctaa-ttttaacctaatattttccctcc 31442585  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 826803 - 826734
Alignment:
Q  418 catctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    ||||||||||||||||  |||| |||||||| ||||  | ||| ||||||| |||||||||||||||||||    
T  826803 catctttcttactaaaacttgtctggtcaagctattgttcaccttaatttt-aacctaatattttccctcc 826734  T

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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 37337323 - 37337392
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  37337323 atctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcc 37337392  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 26110688 - 26110757
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||  ||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  26110688 atctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcc 26110757  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 11300834 - 11300765
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||  |||| |||| ||| ||| | |||||||||||||||||||||||||||||||||    
T  11300834 atctttcttactaaaacttgtctggtgaagctataagtaaccctaatttttaacctaatattttccctcc 11300765  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 1529164 - 1529234
Alignment:
Q  418 catctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||    
T  1529164 catctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctcc 1529234  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 22424440 - 22424372
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    ||||||||||||||||||| | |||||||| ||||  | ||||||| |||||||||||||||||||||||    
T  22424440 atctttcttactaaagtttatctggtcaagctattgttcaccctaa-ttttaacctaatattttccctcc 22424372  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 37605468 - 37605422
Alignment:
Q  442 ggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  37605468 ggtcaagctattagtaaccctaattcttaacctaatattttccctcc 37605422  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 52041454 - 52041390
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttcc 484  Q
    |||||||||||||||| |||| |||||||| ||||  | ||||||| |||||||||||||||||||    
T  52041454 atctttcttactaaagcttgtctggtcaagctattgttcaccctaa-ttttaacctaatattttcc 52041390  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Complemental strand, 49235547 - 49235500
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatt 466  Q
    |||||||||||||||||||||||||||||| ||| | | |||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaatt 49235500  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 39484879 - 39484810
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatat-taataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| ||||||||||||| ||| |  | ||||| | |||||||||||||||||||||||    
T  39484879 atctttcttactaaagcttgtttggtcaagctatatgttcaccct-agttttaacctaatattttccctcc 39484810  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 1141744 - 1141812
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| |||||||||||||  |||  | || |||| |||||| ||||||||||||||||    
T  1141744 atctttcttactaaagcttgtttggtcaagcaattgttcactctaa-ttttaatctaatattttccctcc 1141812  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 15291461 - 15291528
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| ||||||||||||| ||||  | ||||||| | |||||||||| ||||||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaa-tcttaacctaat-ttttccctcc 15291528  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 32281486 - 32281554
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaa-ttttaacctagtattttccctcc 32281554  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 28926075 - 28926143
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| |||| |||||||| ||||| ||||||||||| |||||||||| ||||||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaat-ttttccctcc 28926143  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 38996590 - 38996522
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| |||| || ||||| |||   | ||||||||||| |||||||||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaatttt-aacctaatattttccctcc 38996522  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 15700721 - 15700789
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  15700721 atctttcttactaaagtttgtttggtcaagctattagtaaccctaa-ttttaacctagtattttccctcc 15700789  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 46555502 - 46555571
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||| ||||||||| ||||  ||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  46555502 atctttattactaaagcttgtccggtcaagctattagtaaccctaattcttaacctaatattttccctcc 46555571  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 488
Target Start/End: Original strand, 22964005 - 22964075
Alignment:
Q  417 tcatctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    ||||||| |||||||||| |||| |||||||| ||||  ||||||||| || ||||||||||||||||||||    
T  22964005 tcatcttacttactaaagcttgtctggtcaagctattggtaaccctaa-ttctaacctaatattttccctcc 22964075  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 24819183 - 24819233
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaattttt 469  Q
    ||||| ||||| |||| ||||||||||||| ||||| ||||||||||||||    
T  24819183 atcttacttaccaaagcttgtttggtcaagctattactaaccctaattttt 24819233  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 12094925 - 12094857
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| ||||||||||||| |||||  |||||||| |||||||||||||||||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaa-ttttaacctaatattttccctcc 12094857  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 488
Target Start/End: Original strand, 9451245 - 9451310
Alignment:
Q  422 tttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    ||||||||||||| |||| |||||||| ||||  | ||||||| |||||||||||||||||||||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaa-ttttaacctaatattttccctcc 9451310  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 6898822 - 6898758
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttcc 484  Q
    |||||||||||||||| ||||||| ||||| ||||  ||||||||| | |||||||||||||||||    
T  6898822 atctttcttactaaagcttgtttgatcaagctattggtaaccctaa-tcttaacctaatattttcc 6898758  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 24257703 - 24257771
Alignment:
Q  419 atctttcttactaaagtttgtttggtcaagatattaataaccctaatttttaacctaatattttccctcc 488  Q
    |||||||||||||||| |||||||||||||  |||  | ||||||| ||||||||||||||||| |||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaa-ttttaacctaatatttttcctcc 24257771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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