View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_12 (Length: 499)
Name: NF9730_low_12
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_12 |
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| [»] scaffold0364 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 485
Target Start/End: Complemental strand, 14356260 - 14355782
Alignment:
| Q |
19 |
cagtcaacatcttctgatcaaacagttcttgctcaagtttcttaactcttttgtcttgttcaggatcttgcttcaatttcttaagaattaaaatcgcggg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14356260 |
cagtcaacatcttctgatcaaacagttcttgctcaagtttcttaactcttttgtcttgttcaggatcttgcttcaatttcttaagaattaaaatcgcagg |
14356161 |
T |
|
| Q |
119 |
cttaactttcacttgagtcaaccaagaagtattcagatcctctctgacagatgaagtgatgattgaagaggcatctaagaagaatggagagtctgagatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14356160 |
cttaactttcacttgagtcaaccaagaagtattcagatcctctctaacagatgaagtgatgattgaagaggcatctaagaagaatggagagtctgagatg |
14356061 |
T |
|
| Q |
219 |
tacaatatgttcctactgacttgcactgcttccatactcttgatgacttccttaaaccacttgctaagagactgattttgagcttttatagacaatctct |
318 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14356060 |
tacaatatgttccttctgacttgcactgcttccatactcttgatgacttccttaaaccacttgctaagagactgattttgagcttttatagacaatctct |
14355961 |
T |
|
| Q |
319 |
gcaagtcacaaaagacgttgtctactacttcccttagagcaatccacttgtcttcataattctcaatgtgaactagatcatttctaaaagggtcaaatat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14355960 |
gcaagtcacaaaagacgttgtctactacttcccttagagcaatccacttgtcttcataattctcaatgtgaactagatcatttctaaaagggtcaaatat |
14355861 |
T |
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| Q |
419 |
gttct------------caaaaacctctctcaatacaatagaatccagtaaaagggtaggcggtggtggaacattgatg |
485 |
Q |
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| T |
14355860 |
gttctcaaatatgttctcaaaaacctctctcaatacaatagaatccagtaaaagggtaggcggtggtggaacattgatg |
14355782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 150 - 404
Target Start/End: Complemental strand, 19887095 - 19886841
Alignment:
| Q |
150 |
ttcagatcctctctgacagatgaagtgatgattgaagaggcatctaagaagaatggagagtctgagatgtacaatatgttcctactgacttgcactgctt |
249 |
Q |
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||||||||| || ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |
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| T |
19887095 |
ttcagatccactttgatagttgaagtgatgattgaagaggcatctagaaagaatggagagtctgagatgtaaaatatgttccttctgacttccactgctt |
19886996 |
T |
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| Q |
250 |
ccatactcttgatgacttccttaaaccacttgctaagagactgattttgagcttttatagacaatctctgcaagtcacaaaagacgttgtctactacttc |
349 |
Q |
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||||||||||||| |||||||||||||| ||| | ||||||||||||||||||| || || | || ||||||||||| | || |||| ||| ||| |
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| T |
19886995 |
ccatactcttgataacttccttaaaccagttgttgagagactgattttgagcttcaatggatagcctttgcaagtcacacataactgtgtccactctttc |
19886896 |
T |
|
| Q |
350 |
ccttagagcaatccacttgtcttcataattctcaatgtgaactagatcatttcta |
404 |
Q |
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|||||||| ||||||| |||||||| |||||| |||||| | ||||||||||| |
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| T |
19886895 |
ttttagagcagtccacttatcttcatacttctcagtgtgaattggatcatttcta |
19886841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 9282 - 9109
Alignment:
| Q |
133 |
gagtcaaccaagaagtattcagatcctctctgacagatgaagtgatgattgaagaggcatctaagaagaatggagagtctgagatgtacaatatgttcct |
232 |
Q |
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|||||||||||||| | |||||||||||| |||||||||| | |||| |||||||||||| | |||||||||||||||||| ||||| || ||||||| |
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| T |
9282 |
gagtcaaccaagaaatgttcagatcctctttgacagatgaggatatgactgaagaggcatccaggaagaatggagagtctgatatgtataacttgttcct |
9183 |
T |
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| Q |
233 |
actgacttgcactgcttccatactcttgatgacttccttaaaccacttgctaagagactgattttgagctttta |
306 |
Q |
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|||||| | | |||||||| |||||||||||||||| ||||| || | |||||||||||||||||||||| |
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| T |
9182 |
tatgacttccgtttcttccatattcttgatgacttccttgaaccagctgtttagagactgattttgagctttta |
9109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 171 - 380
Target Start/End: Original strand, 88226 - 88435
Alignment:
| Q |
171 |
gaagtgatgattgaagaggcatctaagaagaatggagagtctgagatgtacaatatgttcctactgacttgcactgcttccatactcttgatgacttcct |
270 |
Q |
| |
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|||||||||||||| || ||||| | ||||||||||||||||||||||| ||| |||| || |||||| |||| ||| ||||||||| || || || | |
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| T |
88226 |
gaagtgatgattgatgaagcatccataaagaatggagagtctgagatgtataatctgtttcttttgacttccacttctttcatactctttataacctctt |
88325 |
T |
|
| Q |
271 |
taaaccacttgctaagagactgattttgagcttttatagacaatctctgcaagtcacaaaagacgttgtctactacttcccttagagcaatccacttgtc |
370 |
Q |
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|||| | ||| | || |||||||||||||||| |||| | ||| |||| ||||| ||||| || |||||| ||| |||||| || |||||||||| |
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| T |
88326 |
gaaactagttgttgagtgactgattttgagcttcattagatagtctttgcagatcacataagactttatctactctttctcttagatcagtccacttgtc |
88425 |
T |
|
| Q |
371 |
ttcataattc |
380 |
Q |
| |
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|||||||||| |
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| T |
88426 |
ttcataattc |
88435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 303
Target Start/End: Complemental strand, 10331913 - 10331738
Alignment:
| Q |
128 |
cacttgagtcaaccaagaagtattcagatcctctctgacagatgaagtgatgattgaagaggcatctaagaagaatggagagtctgagatgtacaatatg |
227 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||| ||| ||| || || || ||| ||||| ||| || || ||||||||||| || |||||| |
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| T |
10331913 |
cacttgagtcaaccaagaagtatccagatcctctttgatagaatgagtaataatggaggagagatctaggaataagggtgagtctgagatatataatatg |
10331814 |
T |
|
| Q |
228 |
ttcctactgacttgcactgcttccatactcttgatgacttccttaaaccacttgctaagagactgattttgagctt |
303 |
Q |
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||||| ||||||| ||| |||||||||| ||| |||||| |||||||| ||| | || |||||||| ||||||| |
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| T |
10331813 |
ttccttctgacttccacaacttccatacttctgacgacttctttaaaccagttgttgagtgactgattctgagctt |
10331738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 22536286 - 22536339
Alignment:
| Q |
411 |
tcaaatatgttctcaaaaacctctctcaatacaatagaatccagtaaaagggta |
464 |
Q |
| |
|
||||||||||||||| | |||||| | |||| ||||||||| |||||||||||| |
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| T |
22536286 |
tcaaatatgttctcacatacctcttttaatataatagaatctagtaaaagggta |
22536339 |
T |
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