View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_low_14 (Length: 455)

Name: NF9730_low_14
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_low_14
NF9730_low_14
[»] chr6 (32 HSPs)
chr6 (1-225)||(26849074-26849302)
chr6 (259-443)||(26848856-26849040)
chr6 (293-429)||(26959376-26959512)
chr6 (279-429)||(26975262-26975412)
chr6 (293-429)||(26635900-26636036)
chr6 (293-429)||(26741866-26742002)
chr6 (304-429)||(25071869-25071994)
chr6 (316-429)||(27214630-27214743)
chr6 (316-429)||(27234485-27234598)
chr6 (283-443)||(26949857-26950017)
chr6 (295-429)||(24715795-24715929)
chr6 (335-429)||(27665000-27665094)
chr6 (305-426)||(26617835-26617956)
chr6 (305-426)||(26723763-26723884)
chr6 (316-426)||(26811722-26811832)
chr6 (308-443)||(27337921-27338056)
chr6 (308-443)||(27398661-27398796)
chr6 (295-373)||(26937372-26937450)
chr6 (304-390)||(28185615-28185701)
chr6 (323-443)||(25579915-25580035)
chr6 (323-410)||(26143094-26143181)
chr6 (292-345)||(28139835-28139888)
chr6 (323-410)||(25538769-25538856)
chr6 (304-390)||(28297565-28297651)
chr6 (304-390)||(28514422-28514508)
chr6 (375-429)||(28098292-28098346)
chr6 (304-390)||(28234812-28234898)
chr6 (326-431)||(25481950-25482055)
chr6 (323-443)||(26056122-26056242)
chr6 (323-443)||(26076092-26076212)
chr6 (304-357)||(28098209-28098262)
chr6 (367-431)||(25506899-25506963)
[»] chr2 (2 HSPs)
chr2 (304-443)||(17993536-17993675)
chr2 (160-214)||(17992943-17992995)
[»] chr1 (2 HSPs)
chr1 (309-429)||(28127523-28127643)
chr1 (309-390)||(28164207-28164288)
[»] scaffold0019 (1 HSPs)
scaffold0019 (304-429)||(58134-58259)
[»] scaffold0038 (1 HSPs)
scaffold0038 (304-390)||(34974-35060)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26849302 - 26849074
Alignment:
Q  1 aatggtgttcatattcatttctgttcattcagaaatatttgaatatatgtatcaaaataacgataacattcatgtatttctaataacaattatattattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26849302 aatggtgttcatattcatttctgttcattcagaaatatttgaatatatgtattaaaataacgataacattcatgtatttctaataacaattatattattg 26849203  T
Q  101 caattaaaattgtttcaacatacaatgagctaattctctctatatgacaggaaaataggaaacatatatctttttctcttttaacacatctaac----tt 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||    
T  26849202 caattaaaattgtttcaacatacaatgagctaattctttctatatgacaggaaaataggaaacatatatctttttctcttttaacacatctaacttaatt 26849103  T
Q  197 aaggaagataatatatatgtgtatgcgca 225  Q
    |||||||||||||||||||||||||||||    
T  26849102 aaggaagataatatatatgtgtatgcgca 26849074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 259 - 443
Target Start/End: Complemental strand, 26849040 - 26848856
Alignment:
Q  259 ggtgcagggggaaaaatgaaattgaaatgatgaggggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttc 358  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26849040 ggtgcagtgggaaaaatgaaattgaaatgatgaggggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccattta 26848941  T
Q  359 agcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaagtgcttcaccataactactattctgatgtc 443  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848940 cgcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaagtgcttcaccataactactattctgatgtc 26848856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 26959512 - 26959376
Alignment:
Q  293 gggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaa 392  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  26959512 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttgaa 26959413  T
Q  393 acacctcttcatgcttagcaagtgcttcaccataact 429  Q
    ||  |||||||||||||||||| ||||||||||||||    
T  26959412 actgctcttcatgcttagcaagcgcttcaccataact 26959376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 279 - 429
Target Start/End: Complemental strand, 26975412 - 26975262
Alignment:
Q  279 attgaaatgatgaggggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttc 378  Q
    |||||||| | || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| | ||||    
T  26975412 attgaaataaagaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaaccgctccaagttttc 26975313  T
Q  379 cttgttattttgaaacacctcttcatgcttagcaagtgcttcaccataact 429  Q
     || |||||||||||| |||||||||||||||||||| |||||||||||||    
T  26975312 atttttattttgaaacccctcttcatgcttagcaagtacttcaccataact 26975262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 26636036 - 26635900
Alignment:
Q  293 gggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaa 392  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||    
T  26636036 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaa 26635937  T
Q  393 acacctcttcatgcttagcaagtgcttcaccataact 429  Q
    ||   ||||||||||||||||| ||||||||||||||    
T  26635936 actgatcttcatgcttagcaagcgcttcaccataact 26635900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 26742002 - 26741866
Alignment:
Q  293 gggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaa 392  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||    
T  26742002 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaa 26741903  T
Q  393 acacctcttcatgcttagcaagtgcttcaccataact 429  Q
    ||   ||||||||||||||||| ||||||||||||||    
T  26741902 actgatcttcatgcttagcaagcgcttcaccataact 26741866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 304 - 429
Target Start/End: Complemental strand, 25071994 - 25071869
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttca 403  Q
    ||||||||| || ||||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||| ||||||||    
T  25071994 attgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgctccatgtgttccttgttattttgaaacccctcttca 25071895  T
Q  404 tgcttagcaagtgcttcaccataact 429  Q
    |||||||||| || ||||||||||||    
T  25071894 tgcttagcaaatgattcaccataact 25071869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 316 - 429
Target Start/End: Complemental strand, 27214743 - 27214630
Alignment:
Q  316 gccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaagt 415  Q
    |||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||     
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27214644  T
Q  416 gcttcaccataact 429  Q
    ||||||||||||||    
T  27214643 gcttcaccataact 27214630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 316 - 429
Target Start/End: Original strand, 27234485 - 27234598
Alignment:
Q  316 gccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaagt 415  Q
    |||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||     
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27234584  T
Q  416 gcttcaccataact 429  Q
    ||||||||||||||    
T  27234585 gcttcaccataact 27234598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 283 - 443
Target Start/End: Complemental strand, 26950017 - 26949857
Alignment:
Q  283 aaatgatgaggggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttg 382  Q
    |||||| || |||||||||| ||||||||||| ||||||||||| |||| | | ||| |||||| |||||||||||||||| ||||||||| |||  |||    
T  26950017 aaatgaagaagggtacccaagattgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttg 26949918  T
Q  383 ttattttgaaacacctcttcatgcttagcaagtgcttcaccataactactattctgatgtc 443  Q
     | ||||| |||  ||||||||||||||||||||||||||||||||||  |||||||||||    
T  26949917 ctcttttggaacctctcttcatgcttagcaagtgcttcaccataactataattctgatgtc 26949857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 429
Target Start/End: Complemental strand, 24715929 - 24715795
Alignment:
Q  295 gtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaac 394  Q
    ||||||||  |||| |||||||||| |||||| ||| || |  ||||||||| ||||| |||||||||| || ||||||  |||||||||||||||||||    
T  24715929 gtacccaagcttgacatggtggccacataagtcagcggcttttttaagagctgtcttctatttcagcaaccggtccatgtgttccttgttattttgaaac 24715830  T
Q  395 acctcttcatgcttagcaagtgcttcaccataact 429  Q
     | ||||||||||||||||| ||||||||||||||    
T  24715829 ccgtcttcatgcttagcaagagcttcaccataact 24715795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 27665000 - 27665094
Alignment:
Q  335 tggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaagtgcttcaccataact 429  Q
    |||| |||||||| ||||||||||||||| ||||||||| ||||| ||| |||||||||| || |||||||||||||||||||||||||||||||    
T  27665000 tggtgaagagcttccttccatttcagcaaccgctccatgttttccatgtcattttgaaactccacttcatgcttagcaagtgcttcaccataact 27665094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 305 - 426
Target Start/End: Complemental strand, 26617956 - 26617835
Alignment:
Q  305 ttgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcat 404  Q
    |||||||| | |||||||||||||  ||| |||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||| |||   ||||||     
T  26617956 ttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacctttcttcaa 26617857  T
Q  405 gcttagcaagtgcttcaccata 426  Q
     || || |||||||||||||||    
T  26617856 actcagtaagtgcttcaccata 26617835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 305 - 426
Target Start/End: Complemental strand, 26723884 - 26723763
Alignment:
Q  305 ttgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcat 404  Q
    |||||||| | |||||||||||||  ||| |||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||| |||   ||||||     
T  26723884 ttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacctttcttcaa 26723785  T
Q  405 gcttagcaagtgcttcaccata 426  Q
     || || |||||||||||||||    
T  26723784 actcagtaagtgcttcaccata 26723763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 26811832 - 26811722
Alignment:
Q  316 gccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaagt 415  Q
    ||||||||||||| || | |||||||||||| ||||||||||| |||| || |||||| |||||||||||||||| ||||  ||||||  || || ||||    
T  26811832 gccagataagttaccaacttggttaagagctatcttccatttctgcaaccgatccatgttttccttgttattttggaacatttcttcaaactcagtaagt 26811733  T
Q  416 gcttcaccata 426  Q
    |||||||||||    
T  26811732 gcttcaccata 26811722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 443
Target Start/End: Original strand, 27337921 - 27338056
Alignment:
Q  308 aaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgct 407  Q
    ||||||||||| || ||||||||||| ||| |||||||  |||||||||||  ||| | ||||||| |||||||||||||||| |||   ||||||||||    
T  27337921 aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27338020  T
Q  408 tagcaag-tgcttcaccataactactattctgatgtc 443  Q
    ||| ||| ||| ||||||||||| | | |||||||||    
T  27338021 tagtaagatgc-tcaccataactcccagtctgatgtc 27338056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 443
Target Start/End: Original strand, 27398661 - 27398796
Alignment:
Q  308 aaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgct 407  Q
    ||||||||||| || ||||||||||| ||| |||||||  |||||||||||  ||| | ||||||| |||||||||||||||| |||   ||||||||||    
T  27398661 aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27398760  T
Q  408 tagcaag-tgcttcaccataactactattctgatgtc 443  Q
    ||| ||| ||| ||||||||||| | | |||||||||    
T  27398761 tagtaagatgc-tcaccataactcccagtctgatgtc 27398796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 26937450 - 26937372
Alignment:
Q  295 gtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatg 373  Q
    |||||||| |||||||||||||||||| ||||| || || |||||||||||| ||||||||||| |||| | |||||||    
T  26937450 gtacccaagattgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatg 26937372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 28185701 - 28185615
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttg 390  Q
    |||||||||||||||||| ||||||||||  ||  |||||||  ||||||||||| |||| | ||||||||| ||||||||||||||    
T  28185701 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttg 28185615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 443
Target Start/End: Complemental strand, 25580035 - 25579915
Alignment:
Q  323 aagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaagtgcttcac 422  Q
    ||||||||||| ||| |||||||| |||||||||   |||| ||||||||| ||| || |||||||||||||  |||||||||||||| |||    ||||    
T  25580035 aagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgcttagtaagatactcac 25579936  T
Q  423 cataactactattctgatgtc 443  Q
    ||||||| | | |||||||||    
T  25579935 cataactcccactctgatgtc 25579915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 410
Target Start/End: Complemental strand, 26143181 - 26143094
Alignment:
Q  323 aagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttag 410  Q
    ||||||||||| ||| |||||||| |||||||||   |||| ||||||||| ||| || |||||||||||||  ||||||||||||||    
T  26143181 aagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgcttag 26143094  T

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Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 28139888 - 28139835
Alignment:
Q  292 ggggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagc 345  Q
    |||||||||||||||||||||||||||||| |||||||| || | |||||||||    
T  28139888 ggggtacccaaaattgaaatggtggccagaaaagttagctgctttgttaagagc 28139835  T

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Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 410
Target Start/End: Complemental strand, 25538856 - 25538769
Alignment:
Q  323 aagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttag 410  Q
    ||||||||||| ||| |||||||| |||||||||   |||| ||||||||| ||| ||  ||||||||||||  ||||||||||||||    
T  25538856 aagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttcatgcttag 25538769  T

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Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 390
Target Start/End: Original strand, 28297565 - 28297651
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttg 390  Q
    |||||||||||||||||| ||||||||||  ||  |||||||  ||||||||||| |||| | ||||||| | | ||||||||||||    
T  28297565 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttg 28297651  T

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Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 28514508 - 28514422
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttg 390  Q
    |||||||||||||||||| ||||||||||  ||  |||||||  ||||||||||| |||| | ||||||| | | ||||||||||||    
T  28514508 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttg 28514422  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 28098292 - 28098346
Alignment:
Q  375 tttccttgttattttgaaacacctcttcatgcttagcaagtgcttcaccataact 429  Q
    |||| ||||||||||| |||  ||||||||||||||| | |||||||||||||||    
T  28098292 tttctttgttattttggaacctctcttcatgcttagctaatgcttcaccataact 28098346  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 28234898 - 28234812
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttg 390  Q
    |||||||||||||||||| |||||||  |  ||  |||||||  ||||||||||| |||| | ||||||| | ||||||||||||||    
T  28234898 attgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttg 28234812  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 431
Target Start/End: Complemental strand, 25482055 - 25481950
Alignment:
Q  326 ttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaagtgcttcaccat 425  Q
    |||||||| ||  |||||||  |||||||||   |||| ||||||||| ||| || ||||||||| ||| |||||||||||||||  ||   ||||||||    
T  25482055 ttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctcttcatgcttagtcagatattcaccat 25481956  T
Q  426 aactac 431  Q
    ||||||    
T  25481955 aactac 25481950  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 443
Target Start/End: Complemental strand, 26056242 - 26056122
Alignment:
Q  323 aagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaag-tgcttca 421  Q
    ||||||||||| ||  |||||||  |||||||||   |||| ||||||||| ||| || ||||||||| ||| |||||| |||||||| ||| ||| |||    
T  26056242 aagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgcttagtaagatgc-tca 26056144  T
Q  422 ccataactactattctgatgtc 443  Q
    |||||||| | | |||||||||    
T  26056143 ccataactcccactctgatgtc 26056122  T

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Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 443
Target Start/End: Complemental strand, 26076212 - 26076092
Alignment:
Q  323 aagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgcttagcaag-tgcttca 421  Q
    ||||||||||| ||  |||||||  |||||||||   |||| ||||||||| ||| || ||||||||| ||| |||||| |||||||| ||| ||| |||    
T  26076212 aagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgcttagtaagatgc-tca 26076114  T
Q  422 ccataactactattctgatgtc 443  Q
    |||||||| | | |||||||||    
T  26076113 ccataactcccactctgatgtc 26076092  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 28098209 - 28098262
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccattt 357  Q
    ||||||||||||||| || |||||||| || |||||||||||  ||||||||||    
T  28098209 attgaaatggtggccggacaagttagctgcttggttaagagccatcttccattt 28098262  T

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Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 431
Target Start/End: Original strand, 25506899 - 25506963
Alignment:
Q  367 ctccatgctttccttgttattttgaaacacctcttcatgcttagcaagtgcttcaccataactac 431  Q
    ||||||| ||| ||| ||||||||||||  ||||||||||||||  ||  |||||||||||||||    
T  25506899 ctccatgtttttcttattattttgaaacttctcttcatgcttagtcagatcttcaccataactac 25506963  T

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Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 304 - 443
Target Start/End: Original strand, 17993536 - 17993675
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttca 403  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||  ||||||||    
T  17993536 attgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttca 17993635  T
Q  404 tgcttagcaagtgcttcaccataactactattctgatgtc 443  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  17993636 tgcttagcaagtgcttcaccataactatcattctgatgtc 17993675  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 17992943 - 17992995
Alignment:
Q  160 aaacatatatctttttctcttttaacacatctaacttaaggaagataatatatat 214  Q
    ||||||||||||||| |||| | ||||||| ||||||||||||||||||||||||    
T  17992943 aaacatatatctttt-ctctat-aacacatttaacttaaggaagataatatatat 17992995  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 28127523 - 28127643
Alignment:
Q  309 aatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttcatgctt 408  Q
    |||||| ||| || ||||||||||| ||| | |||||| |||||||||   |||| ||||||||| ||| |||||||||||| |||  |||| |||||||    
T  28127523 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctctccatgctt 28127622  T
Q  409 agcaagtgcttcaccataact 429  Q
    ||||||  |||||||||||||    
T  28127623 agcaagctcttcaccataact 28127643  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 390
Target Start/End: Original strand, 28164207 - 28164288
Alignment:
Q  309 aatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttg 390  Q
    |||||| ||| || ||||||||||| ||| | |||||| |||||||||   |||| ||||||||| ||| ||||||||||||    
T  28164207 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttg 28164288  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 429
Target Start/End: Original strand, 58134 - 58259
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttgaaacacctcttca 403  Q
    |||||||||||||||||| ||||||||||  ||  |||||||| ||||||||||| |||| | ||| ||||| |||||| ||||||| |||  |||   |    
T  58134 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaata 58233  T
Q  404 tgcttagcaagtgcttcaccataact 429  Q
    ||||  |||||||||| |||||||||    
T  58234 tgctcggcaagtgctttaccataact 58259  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 35060 - 34974
Alignment:
Q  304 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttcagcaaacgctccatgctttccttgttattttg 390  Q
    |||||||||||||||||| |||||||  |  ||  |||||||  ||||||||||| |||| | ||||||| | ||||||||||||||    
T  35060 attgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttg 34974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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