View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9730_low_15 (Length: 449)
Name: NF9730_low_15
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_15 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 27482035 - 27482469
Alignment:
| Q |
1 |
tgaatattttccgtgtggtagtcgatcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatggattccatagatacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
27482035 |
tgaatattttccgtgtggtagtcgatcagccaaatagaagtacatatgccccatagctccagtgtgaaattcatttttatatatagattccatagatacg |
27482134 |
T |
|
| Q |
101 |
atttcaccatccttaatctcaattgaacctagttttggataagatacagacattccaacaaggtaaccttttttatttcctgccttctttcccgttccgt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
27482135 |
atttcaccatccttaatcttgattgaacctagttttggataaaatacagacattccaacaaggtaacctttttcatttcctgctttctttcccgttccgt |
27482234 |
T |
|
| Q |
201 |
attttgtttttgatgtgtacaatgtccttccatcctaattcatttatcaaaaacaaataatgaactaataatc-aagatattatatatgtactaaaacaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
27482235 |
attttgtttttgatgtgtacaatgtccttccatcctaattcatttatcaaaaacaaataatgaactaataatcgtagatattatatgtgtactaaaacaa |
27482334 |
T |
|
| Q |
300 |
aattaattttactacaaatggaaatatgaaagtttattattactaaagaaacgtatcaagaaaacataaacaagtttnnnnnnnngtattcaatttaaca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
27482335 |
aattaattttactacaaatggaaatatgaaagtttattattactaaagaaacgtatcaagaaaacaaaaacaagtttaaaaaaaagtattcaatttaaca |
27482434 |
T |
|
| Q |
400 |
ttaaactttacctgtccatatagtgttgcattaat |
434 |
Q |
| |
|
| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
27482435 |
taaaacgttacctgtctatatagtgttgcattaat |
27482469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 27489230 - 27489606
Alignment:
| Q |
1 |
tgaatattttccgtgtggtagtcgatcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatggattccatagatacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27489230 |
tgaatattttccgtgtggtagtcgatcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatggattccatagatacg |
27489329 |
T |
|
| Q |
101 |
atttcaccatccttaatctcaattgaacctagttttggataagatacagacattccaacaaggtaaccttttttatttcctgccttctttcccgttccgt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
27489330 |
atttcaccatccttaatcttgattgaacctagttttggataagatacagacattccaacaaggtaacctttttcatttcctgccttctttcccgttccgt |
27489429 |
T |
|
| Q |
201 |
attttgtttttgatgtgtacaatgtccttccatcctaattcatttatcaaaaacaaataatgaactaataatca-agatattatatatgtactaaaacaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
27489430 |
attttgtttttgatgtgtacaatgtccttccatcctaattcatttatcaaaaacaaataatgaactaataatcatagatattatatgtgtactaaaacaa |
27489529 |
T |
|
| Q |
300 |
aattaattttactacaaatggaaatatgaaagtttattattactaaagaaacgtatcaagaaaacataaacaagttt |
376 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
27489530 |
aattaattttactacaaatgaaaatatgaaagtttattattactaaagaaacgtatcaagaaaagataaacaggttt |
27489606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 12599229 - 12599461
Alignment:
| Q |
24 |
gatcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatggattccatagatacgatttcaccatccttaatctcaat |
123 |
Q |
| |
|
||||||||| |||||||| ||||| || |||| || ||| ||||||||||||||||||| ||||| || | | | |||||||||| | ||||| | |
|
|
| T |
12599229 |
gatcagccagatagaagtgcatatctctcataactgcaggtagaaattcatttttatatattgattctatcgc-atggtttcaccatcatcaatcttcgt |
12599327 |
T |
|
| Q |
124 |
tgaacctagttttggataagatacagacattccaacaaggtaaccttttttatttcctgccttctttcccgttccgtattttgtttttgatgtgtacaat |
223 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| | ||||||||||| ||| ||| | | ||||| |||| |
|
|
| T |
12599328 |
tgaacctagttttggataacatactgacattccaacaaggtaacctttcgcattccctgcttcttttcccgttccatatgttggtgtcgatgtacacaaa |
12599427 |
T |
|
| Q |
224 |
gtccttccatcctaattcatttatcaaaaacaaa |
257 |
Q |
| |
|
|||||||| |||||||| ||| ||| |||||||| |
|
|
| T |
12599428 |
gtccttccgtcctaattaattaatccaaaacaaa |
12599461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 27489624 - 27489669
Alignment:
| Q |
389 |
tcaatttaacattaaactttacctgtccatatagtgttgcattaat |
434 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
27489624 |
tcaatttaacataaaactttacctgtccatataatgttgcattaat |
27489669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 14623450 - 14623682
Alignment:
| Q |
25 |
atcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatggattccatagatacgatttcaccatccttaatctcaatt |
124 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| || ||| | ||||||||||||||||||| ||||| | || ||| |||||||||| | ||||| ||| |
|
|
| T |
14623450 |
atcagccaaatagaagtgcatatctcccataactgcagggagaaattcatttttatatattgattctacagtcacggtttcaccatcatcaatcttcatt |
14623549 |
T |
|
| Q |
125 |
gaacctagttttggataagatacagacattccaacaaggtaaccttttttatttcctgccttctttcccgttccgtattttgtttttgatgtgtacaatg |
224 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||| | ||| ||||| | ||||||||||| ||| ||| | | ||||| |||| |
|
|
| T |
14623550 |
gaacctaattttggataacatacagacattccaacaaggtaaccttcctcattccctgcttcttttcccgttccatatgttggtgtcgatgtacacaaaa |
14623649 |
T |
|
| Q |
225 |
tccttccatcctaattcatttatcaaaaacaaa |
257 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| |
|
|
| T |
14623650 |
tccttccatcctaattaattaatggaaaacaaa |
14623682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 12018184 - 12017971
Alignment:
| Q |
25 |
atcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatggattccatagatacgatttcaccatccttaatctcaatt |
124 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| || ||| | ||||||||||||||||||| ||||| | | || |||||||||| | ||||| ||| |
|
|
| T |
12018184 |
atcagccaaatagaagtgcatatctcccataacttcagggagaaattcatttttatatattgattctacggtcacagtttcaccatcatcaatcttcatt |
12018085 |
T |
|
| Q |
125 |
gaacctagttttggataagatacagacattccaacaaggtaaccttttttatttcctgccttct-ttcccgttccgtattttgtttttgatgtgtacaat |
223 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||| ||||| |||| ||||| ||||||| | ||||||| |||| |
|
|
| T |
12018084 |
gaacctagttttggataacatacagacattccaacaaggtaaccttcctcattccctg-cttctgttcctgttccatattttggtgttgatgtacacaaa |
12017986 |
T |
|
| Q |
224 |
gtccttccatcctaa |
238 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12017985 |
gtccttccatcctaa |
12017971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 2309206 - 2309106
Alignment:
| Q |
214 |
tgtgtacaatgtccttccatcctaattcatttatcaaaaacaaataatgaactaataatca-agatattatatatgtactaaaacaaaattaattttact |
312 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| || | | |||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
2309206 |
tgtgcacaatgtccttccatcctaattaatttatcaaaaacaaatagtgaactaataaacatatagattatacatgcactaaaacaaaataaattttact |
2309107 |
T |
|
| Q |
313 |
a |
313 |
Q |
| |
|
| |
|
|
| T |
2309106 |
a |
2309106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 2310171 - 2310076
Alignment:
| Q |
107 |
ccatccttaatctcaattgaacctagttttggataagatacagacattccaacaaggtaaccttttttatttcctgccttctttcccgttccgtat |
202 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| |||||||| || |||||| | | |||||||||||||||| |
|
|
| T |
2310171 |
ccatccttaatcttaattgaacctaattttggatagcaaacagacattccaacaacgtaaccttcttcatttccaacttcctttcccgttccgtat |
2310076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 34123640 - 34123786
Alignment:
| Q |
25 |
atcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatggattccatagatacgatttcaccatccttaatctcaatt |
124 |
Q |
| |
|
||||||||||||||||| ||| | ||||||| || ||| | ||||||||||||||||||| ||||| | | ||| |||||||||| | ||||| ||| |
|
|
| T |
34123640 |
atcagccaaatagaagtgcatgtctcccataactgcagggagaaattcatttttatatattgattctacggtcacggtttcaccatcatcaatctttatt |
34123739 |
T |
|
| Q |
125 |
gaacctagttttggataagatacagacattccaacaaggtaaccttt |
171 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34123740 |
gaacctggttttggataacatacagacattccaacaaggtaaccttt |
34123786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 34210897 - 34211129
Alignment:
| Q |
25 |
atcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatggattccatagatacgatttcaccatccttaatctcaatt |
124 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| || | | | ||||||||||||||||||| ||||| | | ||| |||||||||| | ||||| ||| |
|
|
| T |
34210897 |
atcagccaaatagaaatgcatatctcccataactgctgggagaaattcatttttatatattgattctacggtcacggtttcaccatcatcaatcttcatt |
34210996 |
T |
|
| Q |
125 |
gaacctagttttggataagatacagacattccaacaaggtaaccttttttatttcctgccttctttcccgttccgtattttgtttttgatgtgtacaatg |
224 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||||||||||| | ||| ||||| | ||||||||||| ||| ||| | | ||||| |||| | |
|
|
| T |
34210997 |
gaacctggttttggataacatacagacatcccaacaaggtaaccttcctcattccctgcttcttttcccgttccatatgttggtgtcgatgtacacaaag |
34211096 |
T |
|
| Q |
225 |
tccttccatcctaattcatttatcaaaaacaaa |
257 |
Q |
| |
|
| |||||||||||||| ||| || |||||||| |
|
|
| T |
34211097 |
ttcttccatcctaattaattaatgcaaaacaaa |
34211129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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