View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_16 (Length: 448)
Name: NF9730_low_16
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 1755404 - 1755818
Alignment:
| Q |
17 |
acaattgtctgccgtcttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaaccactcgtcttcttgactgcgtagcctggccagc |
116 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
1755404 |
acaattgtctgccatattcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaatcactcgtcttcttgactgcgtagcctggccaac |
1755503 |
T |
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| Q |
117 |
ttgttggtgacaacaacatccaactgtgctgcacgttcaacaatgtccttccttttcttggttgacacattgtgtgcgatctcagcacagtatgtcctgc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1755504 |
ttgttggtgacaacaacatccaactgtgctgcacgttcaacaatgtccttccttttcctggttgacacattgtgtgcgatctcagcacagtatgtcctgt |
1755603 |
T |
|
| Q |
217 |
tgtgcatcatcaaaagttacaggtcatggacattgtgcacgacaaacttcttgaatccattaggcaaatagtggcgggtcttcttgtctgagccgtatcc |
316 |
Q |
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|||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1755604 |
tgtgcatcatcaaaggttccaggtcctggacattgtgcacgacaaacttcttgaatccattaggcaaatagtggcgggtcttcttgtctgagccgtatcc |
1755703 |
T |
|
| Q |
317 |
aatgttgggcatcaaagtaactactttgaattttctcctaactcgtgaatcaataccctttggcctgcgccagctttgcttcacacatattttcctgtca |
416 |
Q |
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||| |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1755704 |
aatattgggcatcaaagtaactcccttgaattttctcctaacttgtgaatcaataccctttggcctgcgccagctttgcttcacacatattttcctgtca |
1755803 |
T |
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| Q |
417 |
ctttgtggcctgatg |
431 |
Q |
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| T |
1755804 |
ctttgtggcctgatg |
1755818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 18705713 - 18705515
Alignment:
| Q |
17 |
acaattgtctgccgtcttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaaccactcgtcttcttgactgcgtagcctggccagc |
116 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18705713 |
acaattgtctgccatgttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaatcactcgtcttcttgactgcgtagcctggccagc |
18705614 |
T |
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| Q |
117 |
ttgttggtgacaacaacatccaactgtgctgcacgttcaacaatgtccttccttttcttggttgacacattgtgtgcgatctcagcacagtatgtcctg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18705613 |
ttgttggtgacaacaacatccaactgtgctgcacgttcaacaatgtccttccttttcctggttgacacattgtgtgcgatctcagcacagtatgtcctg |
18705515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 212 - 396
Target Start/End: Complemental strand, 18705431 - 18705247
Alignment:
| Q |
212 |
cctgctgtgcatcatcaaaagttacaggtcatggacattgtgcacgacaaacttcttgaatccattaggcaaatagtggcgggtcttcttgtctgagccg |
311 |
Q |
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|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18705431 |
cctgttgtgcatcatcaaaagttccaggtcttggacattgtgcacgacaaacttcttgaatccattaggcaaatagtggcgggtcttcttgtctgagccg |
18705332 |
T |
|
| Q |
312 |
tatccaatgttgggcatcaaagtaactactttgaattttctcctaactcgtgaatcaataccctttggcctgcgccagctttgct |
396 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18705331 |
tatccaatattgggcatcaaagtaactcctttgaattttctcctaactcgtgaatcaataccctttggcctgcgccagctttgct |
18705247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 18704646 - 18704610
Alignment:
| Q |
395 |
cttcacacatattttcctgtcactttgtggcctgatg |
431 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
18704646 |
cttcacacatattttcctgtcactttgtggcctgatg |
18704610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 389
Target Start/End: Complemental strand, 35545787 - 35545581
Alignment:
| Q |
183 |
acattgtgtgcgatctcagcacagtatgtcctgctgtgcatcatcaaaagttacaggtcatggacattgtgcacgacaaacttcttgaatccattaggca |
282 |
Q |
| |
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||||||||||| ||||||||||| || ||||| |||||||||| ||||| | || |||| |||||| || ||||| ||||| || ||||| || | |
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| T |
35545787 |
acattgtgtgcaatctcagcacaataagtcctattgtgcatcattaaaagctccaaatcattaacattgcaaacaacaaatttcttaaaaccatttggta |
35545688 |
T |
|
| Q |
283 |
aatagtggcgggtcttcttgtctgagccgtatccaatgttgggcatcaaagtaactactttgaattttctcctaactcgtgaatcaataccctttggcct |
382 |
Q |
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||| || | |||||||| ||||| || || ||||| || |||||||||||| | | || || |||||||| || |||||||||||||||||||| || |
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| T |
35545687 |
gataatgcctagtcttcttatctgatccatacccaatatttggcatcaaagtacatcccttaaactttctcctcacacgtgaatcaataccctttggtct |
35545588 |
T |
|
| Q |
383 |
gcgccag |
389 |
Q |
| |
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||||||| |
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| T |
35545587 |
gcgccag |
35545581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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