View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_18 (Length: 440)
Name: NF9730_low_18
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 24065104 - 24064686
Alignment:
| Q |
18 |
tctaaatcgtggttgaacaactcaaataatcgaatcatagagagcttaaatcgtggttgaataatttcttaaacataatcctcccaccttatgaattttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24065104 |
tctaaatcgtggttgaacaactcaaataatcgaatcatagagagcttaaatcgtggttgaataatttcttaaacataatcctcccaccttatgaattttc |
24065005 |
T |
|
| Q |
118 |
tgaatcagagttctttaattatagatggttgttt--ataatattcttacaagtttaatatacttatttaggcattggcatactcccacacttttcttcac |
215 |
Q |
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||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
24065004 |
tgaatcagagttctttaattataaatggttgtgttcataatattcttacaaggttaatatacttatttaggtacaggcatactcccacacttttcttcac |
24064905 |
T |
|
| Q |
216 |
taaattagaattatttatttagaaatgattacatgcttataatattttaacaaagattataattattcaggtattgggatactctcaatgccatatgcag |
315 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24064904 |
taaataagaattatttatttagaaatgattacatgcttataatattttaacaaagattataattattcaggtattgggatactctcaatgccatatgcag |
24064805 |
T |
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| Q |
316 |
tttcacaaggagggtggctgagtttcatgctactaattatatttgcaatgatatgttggtacacagctttacttctagaaaggtgtatgaatcaacaacc |
415 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24064804 |
tttctcaaggaggatggctgagtttcatgctactaatcatatttgccatgatatgttggtacacagctttacttctagaaaggtgtatgaatcaacaacc |
24064705 |
T |
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| Q |
416 |
attaatcaaatcctatgct |
434 |
Q |
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| T |
24064704 |
attaatcaaatcctatgct |
24064686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 281 - 431
Target Start/End: Complemental strand, 24017356 - 24017206
Alignment:
| Q |
281 |
ttcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaattatatttgcaatgatatgttggtacaca |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
24017356 |
ttcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgttactaattatatttgccatgatatgttggtacaca |
24017257 |
T |
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| Q |
381 |
gctttacttctagaaaggtgtatgaatcaacaaccattaatcaaatcctat |
431 |
Q |
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| T |
24017256 |
gctttacttctagaaaggtgtatgaatcaacaaccattaatcaaatcctat |
24017206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 281 - 431
Target Start/End: Complemental strand, 24075294 - 24075144
Alignment:
| Q |
281 |
ttcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaattatatttgcaatgatatgttggtacaca |
380 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
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| T |
24075294 |
ttcaggtattggcatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaatcatttttgccatgatatgttggtacaca |
24075195 |
T |
|
| Q |
381 |
gctttacttctagaaaggtgtatgaatcaacaaccattaatcaaatcctat |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24075194 |
gctttacttctagaaaggtgtatgaatcaacaaccattaatcaaatcctat |
24075144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 281 - 434
Target Start/End: Complemental strand, 23246675 - 23246522
Alignment:
| Q |
281 |
ttcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaattatatttgcaatgatatgttggtacaca |
380 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
23246675 |
ttcaggtattggaatactatcaatgccatatgcagtttctcaaggagggtggttgagtttcatgctactaattatatttgccatgatatgttgttacaca |
23246576 |
T |
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| Q |
381 |
gctttacttctagaaaggtgtatgaatcaacaaccattaatcaaatcctatgct |
434 |
Q |
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||||||||| |||| |||||||||||| ||| ||| ||||||||| |||||| |
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| T |
23246575 |
gctttacttttagataggtgtatgaatgcacatccaagaatcaaatcttatgct |
23246522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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