View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_19 (Length: 407)
Name: NF9730_low_19
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 91 - 391
Target Start/End: Complemental strand, 3269885 - 3269598
Alignment:
| Q |
91 |
atgaagtaactctctcttgttcacaatcacatacacaaatttggtttacatacatagttaaaagggtatcattgctttataaagtcatttttattttaaa |
190 |
Q |
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| T |
3269885 |
atgaagtaactctctctt-ttcacaatcacat-cacaaatttggtttacatacatagttaaaagggtatcatt----------------tttattttaaa |
3269804 |
T |
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| Q |
191 |
taaataaatagaggggaaatnnnnnnnnnctctctaatgcacgtggttcaaaccttcagttgttggcaatctctctgaatttaatttatacatgnnnnnn |
290 |
Q |
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| T |
3269803 |
taaataaatagaggggaaataaaaaaa--ctctctaatgcacgtggttcaaacctccagttgttggcaatctctctgaatttaatttatacatgtttttt |
3269706 |
T |
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| Q |
291 |
ncatcacaaaacctattataagaaaa-------tttatttaattgcctctgactatctcacctgcttcctttccagcaaagctacagccacaatttccac |
383 |
Q |
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| T |
3269705 |
tcatcacaaaacctattataagaaaatttactctttatttaattgcctctgactatctcacctgcttcctttccagcaaagctacagccaccatttccac |
3269606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3269941 - 3269868
Alignment:
| Q |
1 |
tggtggggaagattaaatgctgggcaacacaaactggacctacacaacagaggaccatgaagtaactctctctt |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3269941 |
tggtggggaagattaaatgctgggcaacacaaactggacctacacaacagaggaccatgaagtaactctctctt |
3269868 |
T |
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