View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_21 (Length: 386)
Name: NF9730_low_21
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 37865327 - 37864959
Alignment:
| Q |
1 |
atattatcaattcgattgcaagaaatagttttagagctgaatattgtaaatttgagaggttttaccaagtttaagaaagttaatatcagtttcattaatg |
100 |
Q |
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| T |
37865327 |
atattatcaattcgattgcaagaaatagttttagagctgaagattgtaaatttgagaggttttaccaagtttaagaaagttaatatcagtatcattaatg |
37865228 |
T |
|
| Q |
101 |
attcatagcacagtgttgcggccaaccttgcatgaactgataatggctatgtcaacgaagcatggcttgagagggaagttgaatggaactaagaagaaaa |
200 |
Q |
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| T |
37865227 |
attcatagcacagtgttgcagccaaccttgcatgaactgataatggctatgtcaacgaagcatggcttgagagggaagttgaatggaactaagaagaaaa |
37865128 |
T |
|
| Q |
201 |
taagttagttagaatctttagtagaatcaaatttctaaaataaataaacttaccgaaccagttgaacatttttctcctcgttttctcctcgttctaaaaa |
300 |
Q |
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| T |
37865127 |
taagttagttagaatctttagtagaatcaaatttctaaaataaataaacttaccgaaccagttgtacatttttctcctcgttttctcctcgttctaaaaa |
37865028 |
T |
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| Q |
301 |
ttaaaactacttaccgaaccagttgtacaattttaacccatcaatggcatgaaccacttaatcatatac |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37865027 |
ttaaaactacttaccgaaccagttgtacaattttaacccatcaatggcatgaaccacttaatcatatac |
37864959 |
T |
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