View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_low_23 (Length: 358)

Name: NF9730_low_23
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_low_23
NF9730_low_23
[»] chr1 (1 HSPs)
chr1 (50-345)||(10550419-10550714)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 50 - 345
Target Start/End: Original strand, 10550419 - 10550714
Alignment:
Q  50 caagtccaaatatatgaaccctaatttcgaagcaaggttgagaagatatataaagacgcagtgatcacgattaacaaaggaagatgggagggagtacgca 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10550419 caagtccaaatatatgaaccctaatttcgaagcaaggttgagaagatatataaagacggagtgatcacgattaacaaaggaagatgggagggagtacgca 10550518  T
Q  150 cgatcaactctacattcaatataacttaaaaataaattaatagattaagcttaaccaaaaacagaaacatattgaacacaaagctgagaataccatgcta 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10550519 cgatcaactctacattcaatataacttaaaaataaattaatagattaagcttaaccaaaaacagaaacatattgaacacaaagctgagaataccatgcta 10550618  T
Q  250 aaaaatcaaacccatcatttcggtcttctttgtcacaaaaatcagatcttctttcgtatttattgacacaatagtgaggtgaaaaataattcattc 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10550619 aaaaatcaaacccatcatttcggtcttctttgtcacaaaaatcagatcttctttcgtatttatagacacaatagtgaggtgaaaaataattcattc 10550714  T

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