View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_24 (Length: 355)
Name: NF9730_low_24
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 16535097 - 16534774
Alignment:
| Q |
22 |
cagcccacatgaacagaacaacacccttcaacatttgtgtgttactccaactctaacaccttacacctctcctttccctattcaatatcattccttttta |
121 |
Q |
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| T |
16535097 |
cagcccacatgaacagaacaacacccttcaacatttgtgtgttactccaactctaacaccttacacctctcctttccctattcaatatcattcctttata |
16534998 |
T |
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| Q |
122 |
ggttaaaaccaacattgtaaaaatggaaactactaaaacactagttgtttatgtttatgtacattaccatgaaggttgttatagagaatttaacaggaac |
221 |
Q |
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| T |
16534997 |
ggttaaaaccaacattgtaaaaatggaaactactaaaacactagttgtttatgtttatgtacattaccatgaaggttgttatagagaatttaacaggaac |
16534898 |
T |
|
| Q |
222 |
actattctatgtacaagtggggaatgatgccacggttgaagatctaaaaagggaaattgaggcccaggtgaaactcccttgtgaccgtttgattctcatt |
321 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16534897 |
actattctatgtccaagtggggaatgatgccacggttgaagatctaaaaagggaaattgaggcccaggtgaaactcccttgtgaccgtatgattctcatt |
16534798 |
T |
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| Q |
322 |
cttgatgctgattgttgccctatg |
345 |
Q |
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|||||||||||||||||||||||| |
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| T |
16534797 |
cttgatgctgattgttgccctatg |
16534774 |
T |
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