View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_26 (Length: 340)
Name: NF9730_low_26
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_26 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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| [»] scaffold0555 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 93 - 340
Target Start/End: Original strand, 9700410 - 9700657
Alignment:
| Q |
93 |
gagcatagattggagttgatcgagtgagggcatgcgcatgcacatgttcaacatgtgttggtgtgcaccaagcgcataatgacgcgtgccaaatacttac |
192 |
Q |
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||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9700410 |
gagcatagattggagttgatcgagtgagggcgtgtgcatgcacgtgttcaacatgtgttggtgtgcaccaagcgcataatgacgcgtgccaaatgcttac |
9700509 |
T |
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| Q |
193 |
gtgacgatgaagtgtaccataaccaaaaagtccaaaaataatcgtgaaacaccagctcaaactctatttatttttagaatttgacaataaattcatttgt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9700510 |
gtgacgatgaagtgtaccataaccaaaaagtccaaaaaaaatcgtgaaacaacatctcaaactctatttatttttagaatttgacaataaattcatttgt |
9700609 |
T |
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| Q |
293 |
cgtcagaaacattgcgaaccataaggccattttgaacatatggacgag |
340 |
Q |
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| T |
9700610 |
cgtcagaaacattgcgaaccataaggccattttgaacatatggacgag |
9700657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 93 - 340
Target Start/End: Original strand, 13566649 - 13566896
Alignment:
| Q |
93 |
gagcatagattggagttgatcgagtgagggcatgcgcatgcacatgttcaacatgtgttggtgtgcaccaagcgcataatgacgcgtgccaaatacttac |
192 |
Q |
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||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13566649 |
gagcatagattggagttgatcgagtgagggcgtgtgcatgcacgtgttcaacatgtgttggtgtgcaccaagcgcataatgacgcgtgccaaatgcttac |
13566748 |
T |
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| Q |
193 |
gtgacgatgaagtgtaccataaccaaaaagtccaaaaataatcgtgaaacaccagctcaaactctatttatttttagaatttgacaataaattcatttgt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13566749 |
gtgacgatgaagtgtaccataaccaaaaagtccaaaaaaaatcgtgaaacaacatctcaaactctatttatttttagaatttgacaataaattcatttgt |
13566848 |
T |
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| Q |
293 |
cgtcagaaacattgcgaaccataaggccattttgaacatatggacgag |
340 |
Q |
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| T |
13566849 |
cgtcagaaacattgcgaaccataaggccattttgaacatatggacgag |
13566896 |
T |
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Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 14844146 - 14844071
Alignment:
| Q |
17 |
cagtaattaaaatttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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| T |
14844146 |
cagtagttaaaatttgataggccccacgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
14844071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 3545110 - 3545035
Alignment:
| Q |
17 |
cagtaattaaaatttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3545110 |
cagtagttaaaatttgataggccccacgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
3545035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 1248583 - 1248519
Alignment:
| Q |
28 |
atttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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| T |
1248583 |
atttgataggccccacacactgtgtatacatcatcaatgttggagtcccagtgccacctgtcaga |
1248519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 34618 - 34543
Alignment:
| Q |
17 |
cagtaattaaaatttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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| T |
34618 |
cagtagttaaaatttgataggccccacacactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
34543 |
T |
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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 476344 - 476419
Alignment:
| Q |
17 |
cagtaattaaaatttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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| T |
476344 |
cagtagttaaaatttgataagccccacgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
476419 |
T |
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Target: scaffold0555 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 7800 - 7874
Alignment:
| Q |
18 |
agtaattaaaatttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
7800 |
agtagttaaaatttgataggccccacgcactgtgtaaacatcattattgttggactcccaaagccacctgtcaga |
7874 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 3939347 - 3939421
Alignment:
| Q |
18 |
agtaattaaaatttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
3939347 |
agtagttaaaatttgataggccccacgcactgtgtaaacatcatcattgttggaatcccaaagccacctgtcaga |
3939421 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 31675062 - 31675136
Alignment:
| Q |
18 |
agtaattaaaatttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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|||| |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31675062 |
agtagttaagatttgataggccccacgcactgtgtaaacatcatcattgttggactcccaaagccacctgtcaga |
31675136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 31921358 - 31921284
Alignment:
| Q |
18 |
agtaattaaaatttgataggccc-acgcactgtgtaaacatcatcagtgttggactcccaaagccacctgtcaga |
91 |
Q |
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|||| |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31921358 |
agtagttaagatttgataggccccacgcactgtgtaaacatcatcattgttggactcccaaagccacctgtcaga |
31921284 |
T |
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