View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_low_27 (Length: 325)

Name: NF9730_low_27
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_low_27
NF9730_low_27
[»] chr8 (4 HSPs)
chr8 (18-304)||(9810498-9810784)
chr8 (41-232)||(18177205-18177396)
chr8 (44-192)||(26969927-26970075)
chr8 (122-204)||(26953332-26953414)
[»] scaffold0015 (1 HSPs)
scaffold0015 (65-304)||(15357-15603)
[»] chr7 (4 HSPs)
chr7 (114-272)||(20489336-20489492)
chr7 (31-209)||(9816099-9816276)
chr7 (31-209)||(10718024-10718201)
chr7 (211-275)||(10326580-10326644)
[»] chr4 (4 HSPs)
chr4 (60-275)||(37840589-37840805)
chr4 (41-220)||(23061218-23061397)
chr4 (41-204)||(32881709-32881872)
chr4 (33-109)||(19317834-19317910)
[»] chr1 (4 HSPs)
chr1 (31-220)||(15230644-15230833)
chr1 (41-220)||(27875758-27875937)
chr1 (50-275)||(39284938-39285163)
chr1 (41-105)||(10396032-10396096)
[»] chr2 (1 HSPs)
chr2 (44-220)||(28591829-28592005)
[»] chr6 (3 HSPs)
chr6 (41-220)||(25906220-25906399)
chr6 (41-107)||(32894076-32894142)
chr6 (41-108)||(13108149-13108216)
[»] chr5 (1 HSPs)
chr5 (44-204)||(30302927-30303087)
[»] chr3 (1 HSPs)
chr3 (175-220)||(42435197-42435242)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 9810784 - 9810498
Alignment:
Q  18 gcagagatcttgatggcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaa 117  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  9810784 gcagagatcttgatgacatatccatttgtaccaatactcctactatttctcactttttgtttacagatgactgctttttatttttcagggcagaggagaa 9810685  T
Q  118 gtaagcacaggttatgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgtt 217  Q
    | ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9810684 ggaagcacaagttatgaagaacattcttcatacatatgaattagcgtccgggcaggccattagccttccaaagtctgaagttttctttagcattgttgtt 9810585  T
Q  218 ccacctcctatgaagtataccatcaccaacatccttggagtcagagcgctaatgggaaatatcttggtttaccgtctatggtgggtc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||    
T  9810584 ccacctcctatgaagtataccatcaccaacatccttggagtcagagcggtaatgggaaatatcttggtatatcgtctatggtgggtc 9810498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 18177205 - 18177396
Alignment:
Q  41 atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca 140  Q
    |||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| |||||||||||  | || ||  | || || || |||||||| |    
T  18177205 atttgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcagggctgatgataatgaggcgcaagtgatgaagaata 18177304  T
Q  141 ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaag 232  Q
    | ||| |||| |||||| |||| |  |||||||||||||||||| |||| ||  | |||||||| |||  |||||||||||| ||| |||||    
T  18177305 tccttcatacttatgaactagctttggggcaggccattagccttccaaattcctaggttttcttcagccgtgttgttccaccgcctttgaag 18177396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 26970075 - 26969927
Alignment:
Q  44 tgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattc 143  Q
    ||||| ||||||||||||||||||||| | |||||| || |||| |||||||| |||||||||||  | || ||  | ||||| || |||||||| ||||    
T  26970075 tgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcagggctgatgataatgaggcacaagtgatgaagaatattc 26969976  T
Q  144 ttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtc 192  Q
    |  |||| |||||| | || || |||||||||||||| ||| |||||||    
T  26969975 tccatacttatgaacttgcttcggggcaggccattagtcttccaaagtc 26969927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 26953414 - 26953332
Alignment:
Q  122 gcacaggttatgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctt 204  Q
    ||||| || |||||||| |||||  |||| |||||| | || || |||||||||||||| ||| |||||||||| ||||||||    
T  26953414 gcacaagtgatgaagaatattctccatacttatgaacttgcttcggggcaggccattagtcttccaaagtctgaggttttctt 26953332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 65 - 304
Target Start/End: Complemental strand, 15603 - 15357
Alignment:
Q  65 tctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattcttgatacatatgaattagcgt 164  Q
    |||||| |||| ||| || | |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| || ||| ||||||| |||| |    
T  15603 tctcaccttttatttgcagaggactgctttttatttttcagggcagaggagaaggaagcacaagttatgaagaacatttttcataaatatgaaatagcat 15504  T
Q  165 ccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaagtataccatcaccaacatccttggagtcagagc 264  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||    
T  15503 ccgggcaagccattagcctttcaaagtctgaagttttctttagcactgttgttccatctcctattaaggataccatcaccaacatcctaggagtcagagc 15404  T
Q  265 gct-------aatgggaaatatcttggtttaccgtctatggtgggtc 304  Q
    | |       | |||||||||||||||| | ||||||||||||||||    
T  15403 ggtagtgggaactgggaaatatcttggtcttccgtctatggtgggtc 15357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 114 - 272
Target Start/End: Original strand, 20489336 - 20489492
Alignment:
Q  114 agaagtaagcacaggttatgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgt 213  Q
    ||||| ||||||| ||||||||  |||||||| |||||||||||||||||||||  || |||||||||||| ||||||||||||||||||||| ||||||    
T  20489336 agaaggaagcacaagttatgaa--acattcttcatacatatgaattagcgtccgatcaagccattagccttccaaagtctgaagttttctttaacattgt 20489433  T
Q  214 tgttccacctcctatgaagtataccatcaccaacatccttggagtcagagcgctaatgg 272  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  20489434 tgttccatctcctatgaaggataccatcaccaacatccttggagtcagagcggtaatgg 20489492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 9816276 - 9816099
Alignment:
Q  31 tggcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggtt 130  Q
    ||||||||| ||||||||  |||||||||||||||||||| | || ||| || ||||||| ||||| |||||||||||| | |||||  ||||  |||||    
T  9816276 tggcatatctatttgtactcatgcacctactatttctcacctcttatttgcagatgactg-tttttgtttttcagggcagatgagaatgaagcgtaggtt 9816178  T
Q  131 atgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagca 209  Q
    |||||||| |||||  | || ||||| ||||| || |||| | | ||||||||| |||| |||||||||||||||||||    
T  9816177 atgaagaatattctccacacttatgagttagcttcggggctgactattagccttccaaaatctgaagttttctttagca 9816099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 10718201 - 10718024
Alignment:
Q  31 tggcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggtt 130  Q
    ||||||||| ||||||||  |||||||||||||||||||| | || ||| || ||||||| ||||| |||||||||||| | |||||  ||||  |||||    
T  10718201 tggcatatctatttgtactcatgcacctactatttctcacctcttatttgcagatgactg-tttttgtttttcagggcagatgagaatgaagcgtaggtt 10718103  T
Q  131 atgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagca 209  Q
    |||||||| |||||  | || ||||| ||||| || |||| | | ||||||||| |||| |||||||||||||||||||    
T  10718102 atgaagaatattctccacacttatgagttagcttcggggctgactattagccttccaaaatctgaagttttctttagca 10718024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 10326644 - 10326580
Alignment:
Q  211 tgttgttccacctcctatgaagtataccatcaccaacatccttggagtcagagcgctaatgggaa 275  Q
    |||||||||  ||||||| ||| || |||||||||| ||||||||||||||||| ||||||||||    
T  10326644 tgttgttccctctcctataaaggatgccatcaccaatatccttggagtcagagcactaatgggaa 10326580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 275
Target Start/End: Complemental strand, 37840805 - 37840589
Alignment:
Q  60 ctatttctcactttttgtttacatatgactgcttttt-atttttcagggcaaaggagaagtaagcacaggttatgaagaacattcttgatacatatgaat 158  Q
    ||||||||||| ||||||||  | |||||| |||||| ||||||||||||||| || ||  ||||||| || ||||| || |||||| |||| ||||||     
T  37840805 ctatttctcaccttttgtttgtagatgactacttttttatttttcagggcaaatgaaaaagaagcacatgtaatgaaaaatattcttcatacctatgaag 37840706  T
Q  159 tagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaagtataccatcaccaacatccttggagt 258  Q
    |||| |  || |||| |||||||||| ||||  |||||||| ||||||| | | |||||||| ||||||||||| ||  ||||||||||||| |||||||    
T  37840705 tagcattaggacaggtcattagccttccaaaacctgaagttgtctttagaactattgttccatctcctatgaaggatgtcatcaccaacatctttggagt 37840606  T
Q  259 cagagcgctaatgggaa 275  Q
    ||||||| |||||||||    
T  37840605 cagagcggtaatgggaa 37840589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 23061397 - 23061218
Alignment:
Q  41 atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca 140  Q
    |||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| ||||||| ||   | || ||  | ||||| || |||||||| |    
T  23061397 atttgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcaaggttgatgataatgaggcacaagtgatgaagaata 23061298  T
Q  141 ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca 220  Q
    ||||  |||| |||||| | || || |||||| ||||||| ||| |||||| ||| |||||||| || | ||||||||||    
T  23061297 ttctccatacttatgaacttgcttcggggcagaccattagtcttccaaagtatgaggttttcttcagtactgttgttcca 23061218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 32881709 - 32881872
Alignment:
Q  41 atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca 140  Q
    |||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| |||||||||    | || ||| | ||||| || |||||||| |    
T  32881709 atttgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcaggattgacgataaggaggcacaagtgatgaagaata 32881808  T
Q  141 ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctt 204  Q
     |||  |||| |||||| | || || |||||| ||||||| ||| ||||||| || ||||||||    
T  32881809 ctctacatacttatgaacttgcttcggggcagaccattagtcttccaaagtccgaggttttctt 32881872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 19317910 - 19317834
Alignment:
Q  33 gcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggca 109  Q
    ||||||| || ||||| ||||| || | |||||||||| |||| ||| |||||||||| ||||| ||||||||||||    
T  19317910 gcatatctatatgtactaatgctcccattatttctcacattttatttgcatatgactgttttttgtttttcagggca 19317834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 15230644 - 15230833
Alignment:
Q  31 tggcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggtt 130  Q
    ||||||||| ||||||||  ||||||||||||||| |||| |||||||| || ||||||| |||||||||||||||||||| |||||  ||||  |||||    
T  15230644 tggcatatctatttgtactcatgcacctactatttgtcaccttttgtttgcagatgactgttttttatttttcagggcaaatgagaaagaagcgtaggtt 15230743  T
Q  131 atgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca 220  Q
    |||||||| |||||| |||| ||  |  |||| || || || |  ||||||||| |||| | |||||  |||||||||||||||||||||    
T  15230744 atgaagaatattcttcatacttacaagctagcttcgggacatgttattagccttccaaaatttgaagccttctttagcattgttgttcca 15230833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 27875758 - 27875937
Alignment:
Q  41 atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca 140  Q
    |||||||| ||||||||||| ||||||||| | |||||| ||||||| |||||||| ||||||||||   | || |   |||| || || ||||||||||    
T  27875758 atttgtactaatgcacctaccatttctcacctcttgtttgcatatgattgctttttgtttttcagggttgatgacagtgaagcgcaagtgatgaagaaca 27875857  T
Q  141 ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca 220  Q
    ||||  |||| |||||| |||| || |||||||||||||| ||| ||||||| || ||||| || ||||  |||||||||    
T  27875858 ttctccatacttatgaactagcttcagggcaggccattagtcttccaaagtccgaggtttttttcagcaaagttgttcca 27875937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 275
Target Start/End: Original strand, 39284938 - 39285163
Alignment:
Q  50 aatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattcttgata 149  Q
    ||||| ||||||||||||||  ||||||||  | |||||||||||||||||||||||| | | |||||  ||||||| || |||||||  |||||| | |    
T  39284938 aatgctcctactatttctcatcttttgtttggagatgactgctttttatttttcagggtagatgagaatgaagcacatgtaatgaagactattcttcaca 39285037  T
Q  150 catatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaagtataccatcaccaacat 249  Q
    |||| |||||||| |  |||  || || ||| ||| |||| || |||||||||||||| | ||||||||   ||| || |||| |    ||||| |||||    
T  39285038 catacgaattagcattggggtgggacactagtcttccaaaatcagaagttttctttagaactgttgttcactctcatacgaaggacgttatcactaacat 39285137  T
Q  250 ccttggagtcagagcgctaatgggaa 275  Q
    |||||||||||||||  |||||||||    
T  39285138 ccttggagtcagagctgtaatgggaa 39285163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 10396096 - 10396032
Alignment:
Q  41 atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcag 105  Q
    |||||||| ||||||||||||||||||||| |  | ||| || ||||||| ||||| ||||||||    
T  10396096 atttgtactaatgcacctactatttctcacctcctatttgcagatgactgttttttgtttttcag 10396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 28592005 - 28591829
Alignment:
Q  44 tgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattc 143  Q
    ||||| ||||||||||||||||||||| | |||||| || |||| |||||||| |||||||||||  | || ||  | ||||| || |||||||| ||||    
T  28592005 tgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcagggctgatgataatgaggcacaagtgatgaagaatattc 28591906  T
Q  144 ttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca 220  Q
    |  |||| |||||| | || || |||||||||||||| ||| |||||||||| |||||||| || | ||||||||||    
T  28591905 tccatacttatgaacttgcttcggggcaggccattagtcttccaaagtctgaggttttcttcagtactgttgttcca 28591829  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 25906399 - 25906220
Alignment:
Q  41 atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca 140  Q
    |||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| |||||||||||  | || ||  | ||||| || |||||||| |    
T  25906399 atttgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcagggctgatgataatgaggcacaagtgatgaagaata 25906300  T
Q  141 ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca 220  Q
    ||||  |||| |||||| | || || |||||||||||||| ||| ||||||| || |||||||| || | ||||||||||    
T  25906299 ttctccatacttatgaacttgcttcggggcaggccattagtcttccaaagtccgaggttttcttcagtagtgttgttcca 25906220  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 32894076 - 32894142
Alignment:
Q  41 atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcaggg 107  Q
    |||||||| ||||||||||| ||||||||| |||||||| || |||| |||||||||||||||||||    
T  32894076 atttgtactaatgcacctaccatttctcaccttttgtttgcaaatgattgctttttatttttcaggg 32894142  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 13108216 - 13108149
Alignment:
Q  41 atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggc 108  Q
    |||||||| ||| ||||||||||||||||| | |||||| || |||||||| |||| ||||| |||||    
T  13108216 atttgtactaatacacctactatttctcacctcttgtttgcagatgactgccttttcttttttagggc 13108149  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 30302927 - 30303087
Alignment:
Q  44 tgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattc 143  Q
    ||||| ||||||||||| ||||||||| | |||||| || |||| |||||||| ||||||||||   | || ||  | ||||| || |||||||| ||||    
T  30302927 tgtactaatgcacctaccatttctcacctattgtttgcagatgattgctttttgtttttcaggggtgatgataatgaggcacaagtgatgaagaatattc 30303026  T
Q  144 ttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctt 204  Q
    |  |||| |||||| | || || |||||||||||||| ||| |||||||||| ||||||||    
T  30303027 tccatacttatgaacttgcttcggggcaggccattagtcttccaaagtctgaggttttctt 30303087  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 42435197 - 42435242
Alignment:
Q  175 cattagcctttcaaagtctgaagttttctttagcattgttgttcca 220  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||    
T  42435197 cattagccttccaaaatctgaagttttctttagcagtgttgttcca 42435242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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