View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_28 (Length: 323)
Name: NF9730_low_28
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 91 - 305
Target Start/End: Complemental strand, 53676596 - 53676382
Alignment:
| Q |
91 |
taaggttagccgaatagaagcaattaggacacgatctttataggtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcact |
190 |
Q |
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| T |
53676596 |
taaggttagccgaataatagcaattaggacacgatctttatatgtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcact |
53676497 |
T |
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| Q |
191 |
tgtaatttgtaaactttatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtcacacttaaccctctttgtagaagctaagaa |
290 |
Q |
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| T |
53676496 |
tgtaatttgtaaactatatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtgacacttaaacctctttgtagaagctaagaa |
53676397 |
T |
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| Q |
291 |
acacgcagtgaagag |
305 |
Q |
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| T |
53676396 |
acacgcagtcaagag |
53676382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 53676676 - 53676622
Alignment:
| Q |
36 |
gcttgaaatgagtaatagaacaagacacataaagaccaacactataaaaaataac |
90 |
Q |
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| T |
53676676 |
gcttgaaatgagtaatagaacaagacacataaagaccaatactatacaaaataac |
53676622 |
T |
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