View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_29 (Length: 322)
Name: NF9730_low_29
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 31108852 - 31109163
Alignment:
| Q |
1 |
caagcataattatatttgaattgataccaacttccattttcataccnnnnnnnccaggtggttcaaagaaaggaactgatcatattatccaaagtatgaa |
100 |
Q |
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| T |
31108852 |
caagcataattatatttaaattgataccaacttccattttcatacctttttttccaggtggttcaaagaaaggaactgatcatattatccaaagtatgaa |
31108951 |
T |
|
| Q |
101 |
aatcgtaaagattaatggtgccataatttctgtgaacatagatcatagctcaaagcatcttgctgttggttccgatcaagggcatgtgagataattttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31108952 |
aatcgtaaagattaatggtgccataatttctgtgaacatagatcatagctcaaagcatcttgctgttggttccgatcaagggcatgtgagataattttct |
31109051 |
T |
|
| Q |
201 |
agtgtttttcattcaaaatattccnnnnnnntgctttagctcactatttcgtgttctttttacaggcttcagtttgcgtactaatttatgttgatccaat |
300 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
31109052 |
agtgtttttcattcaaaatattccaaaaaaatgctttagctcactatttcgtgttctttttacaggtttcagtttgcgtactaatttatgttaatccaat |
31109151 |
T |
|
| Q |
301 |
ttgtcacaggtt |
312 |
Q |
| |
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|||| ||||||| |
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| T |
31109152 |
ttgttacaggtt |
31109163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 9709458 - 9709342
Alignment:
| Q |
87 |
atccaaagtatgaaaatcgtaaagattaatggtgccataatttctgtgaacatagatcatagctcaaagcatcttgctgttggttccgatcaagggcatg |
186 |
Q |
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||||| ||| ||||| | ||||| | || |||||| |||||| | |||| |||||||||||| ||| |||||||| ||||||||| |||||||| ||| |
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| T |
9709458 |
atccagagtgtgaaacttgtaaaaactattggtgctgtaatttgtatgaatatagatcatagcacaaggcatcttggtgttggttctgatcaaggaaatg |
9709359 |
T |
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| Q |
187 |
tgagataattttctagt |
203 |
Q |
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||||||| |||| |||| |
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| T |
9709358 |
tgagatacttttatagt |
9709342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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