View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_3 (Length: 704)
Name: NF9730_low_3
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 14 - 681
Target Start/End: Complemental strand, 32777960 - 32777293
Alignment:
| Q |
14 |
caaaatcaattctacacgaaaacaaccaaacatgtcattctaccatccatgatcaattccaagtcttttaagagcatctcagttcattgttctcggtctt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32777960 |
caaaatcaattctacacgaaaacaaccaaacatgtcattctaccatccataatcaattccaagtcttttaagagcatctcagttcattgttctaagtctt |
32777861 |
T |
|
| Q |
114 |
ttaagaacggtctcatgtgttttactccatatgaagatgagtgggttgaaatcaaccttttagaagagtttcctttaggacatttctaacagaataagaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777860 |
ttaagaacggtctcatgtgttttactccatatgaagatgagtgggttgaaatcaaccttttagaagagtttcctttaggacatttctaacagaataagaa |
32777761 |
T |
|
| Q |
214 |
attaatttcaacccaaaattgatgaagtgacgaatctcataccgttaaggacacggtgctgtgtagtaagaataaaccatcaatttagtcataatgttta |
313 |
Q |
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||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
32777760 |
attaatttcaagccaaaattggtgaagtgaggaatctcatacagttaaggacacagtgctttgtagtaagaataaactatcaatttagtcttaatgttat |
32777661 |
T |
|
| Q |
314 |
taaaaatccgtcaatttagaccttaacattttaatgattaagactatattaacaaactttataaactttaatgacttattataatttaggagatttatta |
413 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32777660 |
aaaaaatccgtcaatttagaccttaacattttaatgattaagactatattgacaaactttataaactttaatgacttattataatttgggagatttatta |
32777561 |
T |
|
| Q |
414 |
tggtcagggatttctttctttgaaatttattatagtttagagattaaattaaaaagaccgtgatagtttattaatggttagtttagtaaacactaaacac |
513 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32777560 |
tagtcagggatttctttctttgaaatttattatagtttagagattaaattgaagagatcgtgatagtttatgaatggttagtttagtaaacactaaacac |
32777461 |
T |
|
| Q |
514 |
acaaatttgggtggttctgaattatacttcggtaattttatcaagagaatgtatggaaccacatccaaccactctaaacgcgtatacatgagttttcacc |
613 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||| |||| ||||||||||||||||||| |
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| T |
32777460 |
acaaatttgggtggttctgaattatacttcgataattttatcaagagaatgtttggaaccacgtccaacaactccaaacatgtatacatgagttttcacc |
32777361 |
T |
|
| Q |
614 |
gtgatttttagaagctggggtttagatttacaatacagttgagcgttagttgtagatcattagattaa |
681 |
Q |
| |
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|||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32777360 |
gtgatttttaaaagctagaatttagatttacaatacagttgagcgttagtcgtagatcattagattaa |
32777293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 43310636 - 43310669
Alignment:
| Q |
15 |
aaaatcaattctacacgaaaacaaccaaacatgt |
48 |
Q |
| |
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|
| T |
43310636 |
aaaatcaattctactcgaaaacaaccaaacatgt |
43310669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 646170 - 646133
Alignment:
| Q |
14 |
caaaatcaattctacacgaaaacaaccaaacatgtcat |
51 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| |
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|
| T |
646170 |
caaaatcaattctactcaaaaacaaccaaacatgtcat |
646133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 28083983 - 28084019
Alignment:
| Q |
14 |
caaaatcaattctacacgaaaacaaccaaacatgtca |
50 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |
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|
| T |
28083983 |
caaaatcaattctactcgaaaacaaccaaatatgtca |
28084019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 28725150 - 28725182
Alignment:
| Q |
17 |
aatcaattctacacgaaaacaaccaaacatgtc |
49 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
28725150 |
aatcaattctaaacgaaaacaaccaaacatgtc |
28725182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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