View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_low_34 (Length: 302)

Name: NF9730_low_34
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_low_34
NF9730_low_34
[»] chr5 (4 HSPs)
chr5 (18-264)||(17326302-17326542)
chr5 (235-264)||(10924193-10924222)
chr5 (231-264)||(34894040-34894073)
chr5 (235-264)||(41063518-41063547)
[»] chr8 (5 HSPs)
chr8 (208-264)||(32061728-32061784)
chr8 (208-275)||(14327413-14327480)
chr8 (208-257)||(18190974-18191023)
chr8 (231-264)||(31874041-31874074)
chr8 (228-277)||(36545892-36545941)
[»] scaffold0009 (1 HSPs)
scaffold0009 (197-277)||(104975-105055)
[»] chr1 (3 HSPs)
chr1 (208-252)||(34566694-34566738)
chr1 (208-257)||(13691890-13691939)
chr1 (231-264)||(22345036-22345069)
[»] chr3 (4 HSPs)
chr3 (208-275)||(37051558-37051625)
chr3 (231-264)||(1165520-1165553)
chr3 (231-264)||(43029640-43029673)
chr3 (231-267)||(50519747-50519783)
[»] chr4 (5 HSPs)
chr4 (208-274)||(33021040-33021106)
chr4 (231-277)||(4634240-4634286)
chr4 (231-264)||(1657694-1657727)
chr4 (231-264)||(9661810-9661843)
chr4 (231-264)||(16991829-16991862)
[»] chr2 (7 HSPs)
chr2 (231-277)||(6089850-6089896)
chr2 (231-264)||(3390389-3390422)
chr2 (231-264)||(25771402-25771435)
chr2 (235-267)||(3602946-3602978)
chr2 (231-267)||(27024260-27024296)
chr2 (231-275)||(27191448-27191492)
chr2 (231-275)||(27841262-27841306)
[»] chr7 (6 HSPs)
chr7 (231-264)||(40775224-40775257)
chr7 (208-275)||(21329408-21329475)
chr7 (231-264)||(47749691-47749724)
chr7 (231-263)||(135230-135262)
chr7 (232-264)||(36350169-36350201)
chr7 (231-267)||(49166884-49166920)
[»] chr6 (1 HSPs)
chr6 (231-264)||(4663944-4663977)
[»] scaffold0045 (1 HSPs)
scaffold0045 (231-275)||(9761-9805)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 17326542 - 17326302
Alignment:
Q  18 tttacttcctttcaacttatagaaagaaagaagaaacttagttaaggnnnnnnnnnntcaaatgtgcaatgttggtaataagtggtaagaaaagaaatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||  | |||||| |||||||||||||||||||||    
T  17326542 tttacttcctttcaacttatagaaagaaagaagaaacttagttaaggaaaaaaaaa-tcaaatgtgcacagatggtaaaaagtggtaagaaaagaaatca 17326444  T
Q  118 gtaaatttaaggagaaactacaaaagaaggaaactaataattttctatttatcaatgtggaccacgccaannnnnnnccctctctcccaatctctcttgt 217  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||  ||     |||    
T  17326443 gaaaatttaaggagaaactacaaaagaaggaaactaataattttctatttatcaatgtggaccacgccaatttttttccctctctccccctc-----tgt 17326349  T
Q  218 gagctgtcggctgaaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||| ||||||| ||||||||||| ||||| ||||||||| ||||||    
T  17326348 gagccgtcggctaaaaccctaattacttcttcttcatccaccaaaga 17326302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 10924222 - 10924193
Alignment:
Q  235 cctaatttcttctccttcatccatcaaaga 264  Q
    ||||||||||||||||||||||||||||||    
T  10924222 cctaatttcttctccttcatccatcaaaga 10924193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 34894073 - 34894040
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  34894073 aaaccctagtttcttctccttcatccatcaaaga 34894040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 41063547 - 41063518
Alignment:
Q  235 cctaatttcttctccttcatccatcaaaga 264  Q
    ||||||||||||||||||||||||||||||    
T  41063547 cctaatttcttctccttcatccatcaaaga 41063518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 32061728 - 32061784
Alignment:
Q  208 tctctcttgtgagctgtcggctgaaaccctaatttcttctccttcatccatcaaaga 264  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  32061728 tctcttttgtgagccgtcagctgaaaccctaatttcttctccttcatccaccaaaga 32061784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 14327413 - 14327480
Alignment:
Q  208 tctctcttgtgagctgtcggctgaaaccctaatttcttctccttcatccatcaaagatggatggttta 275  Q
    ||||| |||||||| ||| |||||||| |||||||||||||||||||||| |||||| || |||||||    
T  14327413 tctcttttgtgagccgtcagctgaaacgctaatttcttctccttcatccaccaaagaggggtggttta 14327480  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 18191023 - 18190974
Alignment:
Q  208 tctctcttgtgagctgtcggctgaaaccctaatttcttctccttcatcca 257  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  18191023 tctcttttgtgagccgtcggctgaaaccctaatttcttttccttcatcca 18190974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 31874041 - 31874074
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  31874041 aaaccctagtttcttctccttcatccatcaaaga 31874074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 36545941 - 36545892
Alignment:
Q  228 ctgaaaccctaatttcttctccttcatccatcaaagatggatggtttaag 277  Q
    |||||| |||| |||||||||||||||||| |||||| ||||| ||||||    
T  36545941 ctgaaatcctagtttcttctccttcatccaccaaagagggatgatttaag 36545892  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 104975 - 105055
Alignment:
Q  197 ctctctcccaatctctcttgtgagctgtcggctgaaaccctaatttcttctccttcatccatcaaagatggatggtttaag 277  Q
    |||||||||  ||||| |||||||||||| ||| |||||||||||| |||| ||||||||| ||||||  | |||||||||    
T  104975 ctctctccccctctcttttgtgagctgtcagctaaaaccctaatttattcttcttcatccaccaaagagaggtggtttaag 105055  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 34566694 - 34566738
Alignment:
Q  208 tctctcttgtgagctgtcggctgaaaccctaatttcttctccttc 252  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||    
T  34566694 tctcttttgtgagccgtcggctgaaaccctaatttcttctccttc 34566738  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 13691939 - 13691890
Alignment:
Q  208 tctctcttgtgagctgtcggctgaaaccctaatttcttctccttcatcca 257  Q
    ||||| |||||||| |||||| |||||| ||||||||||| |||||||||    
T  13691939 tctcttttgtgagccgtcggccgaaaccttaatttcttcttcttcatcca 13691890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 22345069 - 22345036
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  22345069 aaaccctagtttcttctccttcatccatcaaaga 22345036  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 37051558 - 37051625
Alignment:
Q  208 tctctcttgtgagctgtcggctgaaaccctaatttcttctccttcatccatcaaagatggatggttta 275  Q
    ||||| |||||||| |||||| ||||| ||||||||||||| |||||||| |||||| ||||| ||||    
T  37051558 tctcttttgtgagccgtcggccgaaactctaatttcttctctttcatccaccaaagagggatgattta 37051625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 1165553 - 1165520
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  1165553 aaaccctagtttcttctccttcatccatcaaaga 1165520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 43029640 - 43029673
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  43029640 aaaccctagtttcttctccttcatccatcaaaga 43029673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 50519747 - 50519783
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaagatgg 267  Q
    |||||||| |||||||||||||||||| |||||||||    
T  50519747 aaaccctagtttcttctccttcatccaccaaagatgg 50519783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 33021106 - 33021040
Alignment:
Q  208 tctctcttgtgagctgtcggctgaaaccctaatttcttctccttcatccatcaaagatggatggttt 274  Q
    ||||| |||||||  ||||||||||||||||||||  ||||||||||||| |||||| || ||||||    
T  33021106 tctcttttgtgagtcgtcggctgaaaccctaattttatctccttcatccaccaaagaggggtggttt 33021040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 4634240 - 4634286
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaagatggatggtttaag 277  Q
    |||||||| ||||||||||||||||||||||||| || || ||||||    
T  4634240 aaaccctagtttcttctccttcatccatcaaagaggggtgatttaag 4634286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 1657727 - 1657694
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  1657727 aaaccctagtttcttctccttcatccatcaaaga 1657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 9661810 - 9661843
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  9661810 aaaccctagtttcttctccttcatccatcaaaga 9661843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 16991829 - 16991862
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  16991829 aaaccctagtttcttctccttcatccatcaaaga 16991862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 6089850 - 6089896
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaagatggatggtttaag 277  Q
    |||||||||||||||||||||||||||||||||| || || ||||||    
T  6089850 aaaccctaatttcttctccttcatccatcaaagaggggtgatttaag 6089896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 3390389 - 3390422
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  3390389 aaaccctagtttcttctccttcatccatcaaaga 3390422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 25771402 - 25771435
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    |||||||| |||||||||||||||||||||||||    
T  25771402 aaaccctagtttcttctccttcatccatcaaaga 25771435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 3602946 - 3602978
Alignment:
Q  235 cctaatttcttctccttcatccatcaaagatgg 267  Q
    |||| ||||||||||||||||||||||||||||    
T  3602946 cctagtttcttctccttcatccatcaaagatgg 3602978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 27024296 - 27024260
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaagatgg 267  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  27024296 aaactctagtttcttctccttcatccatcaaagatgg 27024260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 27191492 - 27191448
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaagatggatggttta 275  Q
    |||||||| |||||||||||||||||| |||||| ||||| ||||    
T  27191492 aaaccctagtttcttctccttcatccaccaaagagggatgattta 27191448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 27841306 - 27841262
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaagatggatggttta 275  Q
    |||||||| |||||||||||||||||| |||||| ||||| ||||    
T  27841306 aaaccctagtttcttctccttcatccaccaaagagggatgattta 27841262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 40775224 - 40775257
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    ||||||||||||||||||||||||||||||||||    
T  40775224 aaaccctaatttcttctccttcatccatcaaaga 40775257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 21329475 - 21329408
Alignment:
Q  208 tctctcttgtgagctgtcggctgaaaccctaatttcttctccttcatccatcaaagatggatggttta 275  Q
    ||||| |||||||| ||||| ||||| |||||||||||||| || ||||| |||||| || |||||||    
T  21329475 tctcttttgtgagccgtcggatgaaatcctaatttcttctcatttatccaccaaagaggggtggttta 21329408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 47749691 - 47749724
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    ||||||||||||||||||||||||||| ||||||    
T  47749691 aaaccctaatttcttctccttcatccaccaaaga 47749724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 135262 - 135230
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaag 263  Q
    |||||||| ||||||||||||||||||||||||    
T  135262 aaaccctagtttcttctccttcatccatcaaag 135230  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 36350169 - 36350201
Alignment:
Q  232 aaccctaatttcttctccttcatccatcaaaga 264  Q
    ||||||||||||||||||||||||||| |||||    
T  36350169 aaccctaatttcttctccttcatccattaaaga 36350201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 49166884 - 49166920
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaagatgg 267  Q
    |||||||| |||||||||||||||||| |||||||||    
T  49166884 aaaccctagtttcttctccttcatccaccaaagatgg 49166920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 4663977 - 4663944
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaaga 264  Q
    ||||||||||||||||||||||||||| ||||||    
T  4663977 aaaccctaatttcttctccttcatccaccaaaga 4663944  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 9805 - 9761
Alignment:
Q  231 aaaccctaatttcttctccttcatccatcaaagatggatggttta 275  Q
    |||||||| |||||||||||||||||| |||||| ||||| ||||    
T  9805 aaaccctagtttcttctccttcatccaccaaagagggatgattta 9761  T

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