View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_low_36 (Length: 297)

Name: NF9730_low_36
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_low_36
NF9730_low_36
[»] chr4 (3 HSPs)
chr4 (1-281)||(106002-106282)
chr4 (180-281)||(166715-166816)
chr4 (9-53)||(166547-166591)
[»] chr7 (2 HSPs)
chr7 (3-77)||(13054481-13054555)
chr7 (140-230)||(13054763-13054856)
[»] chr3 (1 HSPs)
chr3 (131-230)||(12135541-12135640)
[»] scaffold0013 (3 HSPs)
scaffold0013 (134-230)||(90399-90498)
scaffold0013 (240-274)||(90264-90298)
scaffold0013 (12-61)||(90709-90758)
[»] chr8 (8 HSPs)
chr8 (145-230)||(5652560-5652645)
chr8 (140-230)||(5687139-5687229)
chr8 (137-230)||(5666132-5666226)
chr8 (3-53)||(5666314-5666364)
chr8 (3-53)||(5687384-5687434)
chr8 (140-230)||(5719256-5719346)
chr8 (3-53)||(5719500-5719550)
chr8 (234-281)||(5686961-5687008)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 106002 - 106282
Alignment:
Q  1 agagagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggttcataattgagtatttattactaattagttaccaatcattcgctgact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106002 agagagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggttcataattgagtatttattactaattagttaccaatcattcgctgact 106101  T
Q  101 tcaaaatgaattgacaataataatgtcttgctaaataataatattgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgg 200  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  106102 tcaacatgaattgacaataataatgtcttgctaaataataataatgcagatatatgtacctctcgaaggaagccgatccaatgttgtacatactgcatgg 106201  T
Q  201 gctcttatgggtttaattcatgccggccagacagagagagaccctactcctctccatcgtgctgcaaaattgctcatcaat 281  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106202 gctcttatgggtttaattcatgccggccaggcagagagagaccctactcctctccatcgtgctgcaaaattgctcatcaat 106282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 166715 - 166816
Alignment:
Q  180 aatgttgtacatactgcatgggctcttatgggtttaattcatgccggccagacagagagagaccctactcctctccatcgtgctgcaaaattgctcatca 279  Q
    ||||||||||| ||||||||||||||||||| |||||||||||  || ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  166715 aatgttgtacaaactgcatgggctcttatggctttaattcatggtggtcaggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatca 166814  T
Q  280 at 281  Q
    ||    
T  166815 at 166816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 166547 - 166591
Alignment:
Q  9 gatggtgggtggggggagagctatctttcaagcccaaaaaaggtt 53  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  166547 gatggtgggtggggggagagctatctttcatgcccaaaaaaggtt 166591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 13054481 - 13054555
Alignment:
Q  3 agagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggttcataattgagtatttattactaat 77  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  13054481 agagaggatggtgggtggggagagagctatctttcatgcccaaaaaaggttcataattgagtaattattactaat 13054555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 13054763 - 13054856
Alignment:
Q  140 aatattgcagatatatgtacctctcgaaggaagc-ag--atccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 230  Q
    |||| |||||| |||| ||||||| ||||||||| ||  ||| ||||||||||| |||||||||| ||| ||| |||||||| |||| ||||||    
T  13054763 aataatgcagaaatatatacctcttgaaggaagccagcaatcaaatgttgtacaaactgcatggggtctcatgagtttaatttatgctggccag 13054856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 12135640 - 12135541
Alignment:
Q  131 ctaaataataatattgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 230  Q
    ||||||| ||||| ||||||||||  ||||||| |||||||| ||||| ||| ||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  12135640 ctaaatattaataatgcagatatacatacctcttgaaggaagtagatcaaatcttgtacagactgcatgggctcttctgggtttaattcatgctggccag 12135541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 90498 - 90399
Alignment:
Q  134 aataataatattgcagatatatgtacctctcgaaggaagca--ga-tccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 230  Q
    |||||||||| ||||| ||||||||||||| |||||||||   || || ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  90498 aataataataatgcaggtatatgtacctcttgaaggaagccaggagtcaaatgttgtacaaactgcatgggctcttatgggtttaattcatgctggccag 90399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 90298 - 90264
Alignment:
Q  240 gaccctactcctctccatcgtgctgcaaaattgct 274  Q
    |||||||||||||||||||||||||||||||||||    
T  90298 gaccctactcctctccatcgtgctgcaaaattgct 90264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 90758 - 90709
Alignment:
Q  12 ggtgggtggggggagagctatctttcaagcccaaaaaaggttcataattg 61  Q
    ||||| ||||| ||||||||||||||| |||| |||||||||||||||||    
T  90758 ggtggttggggagagagctatctttcatgccctaaaaaggttcataattg 90709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 5652645 - 5652560
Alignment:
Q  145 tgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 230  Q
    |||||| ||||||||||||||||||| |  |||| ||| |||| || |||||||||||||||||||||||||||||||| ||||||    
T  5652645 tgcagacatatgtacctctcgaaggaggtcgatcaaatattgttcaaactgcatgggctcttatgggtttaattcatgctggccag 5652560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 5687229 - 5687139
Alignment:
Q  140 aatattgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 230  Q
    |||| ||||||||||||||||||| |||||||||  ||| ||| ||||||| || ||||||||||| |||| ||| |||||||||||||||    
T  5687229 aataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacagcatgggctctaatggctttgattcatgccggccag 5687139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 5666226 - 5666132
Alignment:
Q  137 aataatat-tgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 230  Q
    |||||||| |||||||||||| |||||| |||||||||  ||| ||| ||||||| ||  |||||||||| |||| ||| |||||||||||||||    
T  5666226 aataatatatgcagatatatgcacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatggctttgattcatgccggccag 5666132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 5666364 - 5666314
Alignment:
Q  3 agagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggtt 53  Q
    |||||||||||||| ||||| |||||| ||||||||||| |||||||||||    
T  5666364 agagaggatggtggatggggagagagccatctttcaagctcaaaaaaggtt 5666314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 5687434 - 5687384
Alignment:
Q  3 agagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggtt 53  Q
    |||||||||||||||||||| |||||| |||||||| || |||||||||||    
T  5687434 agagaggatggtgggtggggagagagccatctttcatgctcaaaaaaggtt 5687384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 5719346 - 5719256
Alignment:
Q  140 aatattgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 230  Q
    |||| ||||||||||||||||||| |||||||||  ||| ||| ||||||| ||  |||||||||| || | ||| |||||||| ||||||    
T  5719346 aataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccag 5719256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 5719550 - 5719500
Alignment:
Q  3 agagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggtt 53  Q
    |||||||||||||||||||| |||||| |||||||| || |||||||||||    
T  5719550 agagaggatggtgggtggggagagagccatctttcatgctcaaaaaaggtt 5719500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 5687008 - 5686961
Alignment:
Q  234 gagagagaccctactcctctccatcgtgctgcaaaattgctcatcaat 281  Q
    |||||||||||||||||||| |||||||||| ||||||  ||||||||    
T  5687008 gagagagaccctactcctcttcatcgtgctgtaaaattaatcatcaat 5686961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University